Analysis of interatomic Contacts of Structural Units in PDB entry:
8HD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HD0 entry

There are 5 chains in PDB entry 8HD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 218
B
 MET 1GLY 218
C
 ASN 63PRO 361
D
 ASN 63PRO 361
E
 LEU 40ARG 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8HD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 50Right-handed alpha
Helix 2
AA2
A
73 80Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
110 125Right-handed alpha
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
139 152Right-handed alpha
Helix 8
AA8
A
153 155Right-handed 310
Helix 9
AA9
A
169 185Right-handed alpha
Helix 10
AB1
A
196 201Right-handed alpha
Helix 11
AB2
B
40 50Right-handed alpha
Helix 12
AB3
B
73 77Right-handed 310
Helix 13
AB4
B
95 108Right-handed alpha
Helix 14
AB5
B
110 124Right-handed alpha
Helix 15
AB6
B
127 131Right-handed 310
Helix 16
AB7
B
134 138Right-handed 310
Helix 17
AB8
B
139 153Right-handed alpha
Helix 18
AB9
B
169 185Right-handed alpha
Helix 19
AC1
B
197 202Right-handed alpha
Helix 20
AC2
C
64 79Right-handed alpha
Helix 21
AC3
C
80 107Right-handed alpha
Helix 22
AC4
C
130 141Right-handed alpha
Helix 23
AC5
C
156 165Right-handed alpha
Helix 24
AC6
C
189 194Right-handed alpha
Helix 25
AC7
C
194 207Right-handed alpha
Helix 26
AC8
C
221 225Right-handed 310
Helix 27
AC9
C
229 261Right-handed alpha
Helix 28
AD1
C
261 270Right-handed alpha
Helix 29
AD2
C
279 300Right-handed alpha
Helix 30
AD3
C
302 320Right-handed alpha
Helix 31
AD4
C
329 355Right-handed alpha
Helix 32
AD5
D
64 79Right-handed alpha
Helix 33
AD6
D
80 116Right-handed alpha
Helix 34
AD7
D
130 141Right-handed alpha
Helix 35
AD8
D
156 164Right-handed alpha
Helix 36
AD9
D
189 194Right-handed alpha
Helix 37
AE1
D
194 207Right-handed alpha
Helix 38
AE2
D
219 261Right-handed alpha
Helix 39
AE3
D
264 271Right-handed alpha
Helix 40
AE4
D
274 319Right-handed alpha
Helix 41
AE5
D
329 359Right-handed alpha
Helix 42
AE6
E
41 51Right-handed alpha
Helix 43
AE7
E
52 123Right-handed alpha
Helix 44
AE8
E
144 150Right-handed alpha
Helix 45
AE9
E
152 217Right-handed alpha
Helix 46
AF1
E
221 247Right-handed alpha
Helix 47
AF2
E
248 271Right-handed alpha
Helix 48
AF3
E
278 286Right-handed alpha
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There are 9 sheets in PDB entry 8HD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 25first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
64 65anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
158 162parallel
Strand 3
A
189 193parallel
Strand 4
A
31 35parallel
Strand 5
A
206 210parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 25first strand
Strand 2
B
2 11anti-parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
64 65anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
158 162parallel
Strand 3
B
189 193parallel
Strand 4
B
31 35parallel
Strand 5
B
206 210parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
185 186anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 152first strand
Strand 2
D
184 185anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 315first strand
Strand 2
E
318 319anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
322 326first strand
Strand 2
E
399 406anti-parallel
Strand 3
E
409 411anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
340 344first strand
Strand 2
E
354 357anti-parallel
Strand 3
E
363 366anti-parallel
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