Analysis of interatomic Contacts of Structural Units in PDB entry:
8HD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HD2 entry

There is 1 chain in PDB entry 8HD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 17PRO 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8HD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
42 55Right-handed alpha
Helix 4
AA4
A
60 77Right-handed alpha
Helix 5
AA5
A
116 130Right-handed alpha
Helix 6
AA6
A
139 141Right-handed 310
Helix 7
AA7
A
142 151Right-handed alpha
Helix 8
AA8
A
152 168Right-handed alpha
Helix 9
AA9
A
184 194Right-handed alpha
Helix 10
AB1
A
207 213Right-handed alpha
Helix 11
AB2
A
217 221Right-handed 310
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
256 258Right-handed 310
Helix 15
AB6
A
259 270Right-handed alpha
Helix 16
AB7
A
294 309Right-handed alpha
Helix 17
AB8
A
319 331Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8HD2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
196 201parallel
Strand 3
A
174 179parallel
Strand 4
A
243 249parallel
Strand 5
A
271 280parallel
Strand 6
A
343 347anti-parallel
Strand 7
A
333 338anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il