Analysis of interatomic Contacts of Structural Units in PDB entry:
8HD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HD3 entry

There are 2 chains in PDB entry 8HD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 258LYS 505
B
 GLU 258ASP 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8HD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
260 276Right-handed alpha
Helix 2
AA2
A
280 290Right-handed alpha
Helix 3
AA3
A
293 319Right-handed alpha
Helix 4
AA4
A
321 325Right-handed 310
Helix 5
AA5
A
326 353Right-handed alpha
Helix 6
AA6
A
355 367Right-handed alpha
Helix 7
AA7
A
372 388Right-handed alpha
Helix 8
AA8
A
392 405Right-handed alpha
Helix 9
AA9
A
414 437Right-handed alpha
Helix 10
AB1
A
442 456Right-handed alpha
Helix 11
AB2
A
456 467Right-handed alpha
Helix 12
AB3
A
467 472Right-handed alpha
Helix 13
AB4
A
476 483Right-handed alpha
Helix 14
AB5
A
492 495Right-handed 310
Helix 15
AB6
A
496 504Right-handed alpha
Helix 16
AB7
B
260 276Right-handed alpha
Helix 17
AB8
B
278 286Right-handed alpha
Helix 18
AB9
B
287 289Right-handed 310
Helix 19
AC1
B
293 318Right-handed alpha
Helix 20
AC2
B
321 325Right-handed 310
Helix 21
AC3
B
326 353Right-handed alpha
Helix 22
AC4
B
355 367Right-handed alpha
Helix 23
AC5
B
372 388Right-handed alpha
Helix 24
AC6
B
392 405Right-handed alpha
Helix 25
AC7
B
414 437Right-handed alpha
Helix 26
AC8
B
442 471Right-handed alpha
Helix 27
AC9
B
476 484Right-handed alpha
Helix 28
AD1
B
492 495Right-handed 310
Helix 29
AD2
B
496 504Right-handed alpha
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There are no sheets in PDB entry 8HD3
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il