Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HDD entry

There are 3 chains in PDB entry 8HDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10VAL 539
B
 GLY 305ARG 425
C
 THR 52ALA 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8HDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
114 120Right-handed 310
Helix 5
AA5
A
133 136Right-handed 310
Helix 6
AA6
A
137 149Right-handed alpha
Helix 7
AA7
A
175 187Right-handed alpha
Helix 8
AA8
A
189 192Right-handed 310
Helix 9
AA9
A
230 240Right-handed alpha
Helix 10
AB1
A
288 295Right-handed alpha
Helix 11
AB2
A
351 356Right-handed 310
Helix 12
AB3
A
369 379Right-handed alpha
Helix 13
AB4
A
385 399Right-handed alpha
Helix 14
AB5
A
439 460Right-handed alpha
Helix 15
AB6
A
508 512Right-handed 310
Helix 16
AB7
A
520 539Right-handed alpha
Helix 17
AB8
B
325 334Right-handed alpha
Helix 18
AB9
B
357 361Right-handed 310
Helix 19
AC1
B
364 373Right-handed alpha
Helix 20
AC2
B
394 408Right-handed alpha
Helix 21
AC3
B
411 415Right-handed 310
Helix 22
AC4
B
420 425Right-handed alpha
Helix 23
AC5
C
55 67Right-handed alpha
Helix 24
AC6
C
72 84Right-handed alpha
Helix 25
AC7
C
93 102Right-handed alpha
Helix 26
AC8
C
107 123Right-handed alpha
Helix 27
AC9
C
136 141Right-handed 310
Helix 28
AD1
C
155 160Right-handed 310
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There are 4 sheets in PDB entry 8HDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
34 38parallel
Strand 3
A
11 14parallel
Strand 4
A
280 283parallel
Strand 5
A
504 506parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
432 436parallel
Strand 3
A
416 419anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
343 348anti-parallel
Strand 3
A
360 364anti-parallel
Strand 4
A
400 406anti-parallel
Strand 5
A
321 328anti-parallel
Strand 6
A
463 473anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 256first strand
Strand 2
A
260 267anti-parallel
Strand 3
A
273 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il