Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HDF entry

There is 1 chain in PDB entry 8HDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ASP 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8HDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
102 112Right-handed alpha
Helix 5
AA5
A
145 147Right-handed 310
Helix 6
AA6
A
185 200Right-handed alpha
Helix 7
AA7
A
201 204Right-handed 310
Helix 8
AA8
A
221 229Right-handed alpha
Helix 9
AA9
A
230 236Right-handed alpha
Helix 10
AB1
A
243 250Right-handed alpha
Helix 11
AB2
A
251 259Right-handed alpha
Helix 12
AB3
A
269 280Right-handed alpha
Helix 13
AB4
A
304 316Right-handed alpha
Helix 14
AB5
A
317 319Right-handed 310
Helix 15
AB6
A
321 323Right-handed 310
Helix 16
AB7
A
331 335Right-handed 310
Helix 17
AB8
A
353 359Right-handed alpha
Helix 18
AB9
A
417 426Right-handed alpha
Helix 19
AC1
A
462 464Right-handed 310
Helix 20
AC2
A
473 486Right-handed alpha
Helix 21
AC3
A
516 535Right-handed alpha
Helix 22
AC4
A
558 568Right-handed alpha
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There are 7 sheets in PDB entry 8HDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
238 241parallel
Strand 4
A
211 215parallel
Strand 5
A
263 268parallel
Strand 6
A
295 298parallel
Strand 7
A
325 329parallel
Strand 8
A
339 340anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
64 68parallel
Strand 3
A
115 118parallel
Strand 4
A
141 143parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
180 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
371 374anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
454 460anti-parallel
Strand 3
A
442 451anti-parallel
Strand 4
A
401 406anti-parallel
Strand 5
A
383 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 467first strand
Strand 2
A
470 472anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 496first strand
Strand 2
A
499 507anti-parallel
Strand 3
A
540 544parallel
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