Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HDI entry

There are 4 chains in PDB entry 8HDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54GLU 302
B
 SER 54GLU 302
C
 SER 54GLU 302
D
 SER 54GLU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8HDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
93 107Right-handed alpha
Helix 3
AA3
A
120 136Right-handed alpha
Helix 4
AA4
A
156 168Right-handed alpha
Helix 5
AA5
A
168 185Right-handed alpha
Helix 6
AA6
A
195 199Right-handed 310
Helix 7
AA7
A
207 227Right-handed alpha
Helix 8
AA8
A
258 262Right-handed alpha
Helix 9
AA9
A
269 282Right-handed alpha
Helix 10
AB1
A
283 286Right-handed 310
Helix 11
AB2
B
70 83Right-handed alpha
Helix 12
AB3
B
93 107Right-handed alpha
Helix 13
AB4
B
120 136Right-handed alpha
Helix 14
AB5
B
156 168Right-handed alpha
Helix 15
AB6
B
168 185Right-handed alpha
Helix 16
AB7
B
195 199Right-handed 310
Helix 17
AB8
B
207 227Right-handed alpha
Helix 18
AB9
B
255 262Right-handed alpha
Helix 19
AC1
B
269 281Right-handed alpha
Helix 20
AC2
B
282 286Right-handed 310
Helix 21
AC3
C
70 83Right-handed alpha
Helix 22
AC4
C
93 107Right-handed alpha
Helix 23
AC5
C
120 136Right-handed alpha
Helix 24
AC6
C
156 168Right-handed alpha
Helix 25
AC7
C
168 185Right-handed alpha
Helix 26
AC8
C
195 199Right-handed 310
Helix 27
AC9
C
207 227Right-handed alpha
Helix 28
AD1
C
254 260Right-handed alpha
Helix 29
AD2
C
269 282Right-handed alpha
Helix 30
AD3
C
283 286Right-handed 310
Helix 31
AD4
D
70 83Right-handed alpha
Helix 32
AD5
D
93 107Right-handed alpha
Helix 33
AD6
D
120 136Right-handed alpha
Helix 34
AD7
D
156 168Right-handed alpha
Helix 35
AD8
D
168 185Right-handed alpha
Helix 36
AD9
D
195 199Right-handed 310
Helix 37
AE1
D
207 227Right-handed alpha
Helix 38
AE2
D
251 261Right-handed alpha
Helix 39
AE3
D
269 282Right-handed alpha
Helix 40
AE4
D
283 286Right-handed 310
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There are 4 sheets in PDB entry 8HDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
86 91parallel
Strand 3
A
62 65parallel
Strand 4
A
140 143parallel
Strand 5
A
188 193parallel
Strand 6
A
231 238parallel
Strand 7
A
292 295parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
86 91parallel
Strand 3
B
62 65parallel
Strand 4
B
140 143parallel
Strand 5
B
188 193parallel
Strand 6
B
231 238parallel
Strand 7
B
292 295parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 115first strand
Strand 2
C
86 91parallel
Strand 3
C
62 65parallel
Strand 4
C
140 143parallel
Strand 5
C
188 193parallel
Strand 6
C
231 238parallel
Strand 7
C
292 295parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 115first strand
Strand 2
D
86 91parallel
Strand 3
D
62 65parallel
Strand 4
D
140 143parallel
Strand 5
D
188 193parallel
Strand 6
D
231 238parallel
Strand 7
D
292 295parallel
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