Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HDJ entry

There are 8 chains in PDB entry 8HDJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 88	ASN 97
B	PRO 98	ASP 258
C	GLU 88	ASN 97
D	PRO 98	THR 259
E	GLN 87	ASN 97
F	PRO 98	ASP 258
G	GLN 87	ASN 97
H	PRO 98	ALA 255

There are 32 helices in PDB entry 8HDJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	117	119	Right-handed 310
Helix 2	AA2	B	120	128	Right-handed alpha
Helix 3	AA3	B	133	148	Right-handed alpha
Helix 4	AA4	B	177	193	Right-handed alpha
Helix 5	AA5	B	202	212	Right-handed alpha
Helix 6	AA6	B	215	228	Right-handed alpha
Helix 7	AA7	B	233	240	Right-handed alpha
Helix 8	AA8	B	241	250	Right-handed alpha
Helix 9	AA9	D	117	119	Right-handed 310
Helix 10	AB1	D	120	128	Right-handed alpha
Helix 11	AB2	D	133	148	Right-handed alpha
Helix 12	AB3	D	177	193	Right-handed alpha
Helix 13	AB4	D	202	212	Right-handed alpha
Helix 14	AB5	D	215	228	Right-handed alpha
Helix 15	AB6	D	233	240	Right-handed alpha
Helix 16	AB7	D	241	250	Right-handed alpha
Helix 17	AB8	F	117	119	Right-handed 310
Helix 18	AB9	F	120	128	Right-handed alpha
Helix 19	AC1	F	133	148	Right-handed alpha
Helix 20	AC2	F	176	193	Right-handed alpha
Helix 21	AC3	F	202	212	Right-handed alpha
Helix 22	AC4	F	215	229	Right-handed alpha
Helix 23	AC5	F	233	240	Right-handed alpha
Helix 24	AC6	F	241	249	Right-handed alpha
Helix 25	AC7	H	117	119	Right-handed 310
Helix 26	AC8	H	120	128	Right-handed alpha
Helix 27	AC9	H	133	148	Right-handed alpha
Helix 28	AD1	H	176	193	Right-handed alpha
Helix 29	AD2	H	202	212	Right-handed alpha
Helix 30	AD3	H	215	229	Right-handed alpha
Helix 31	AD4	H	233	240	Right-handed alpha
Helix 32	AD5	H	241	249	Right-handed alpha

There are 4 sheets in PDB entry 8HDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	A	90	95	anti-parallel
Strand 4	B	157	164	anti-parallel
Strand 5	B	195	200	parallel
Strand 6	H	256	257	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	157	164	parallel
Strand 4	G	90	95	anti-parallel
Strand 5	H	99	104	anti-parallel
Strand 6	H	110	115	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	115	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	D	157	164	anti-parallel
Strand 5	D	195	200	parallel
Strand 6	F	256	258	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	257	first strand
Strand 2	F	195	200	anti-parallel
Strand 3	F	157	164	parallel
Strand 4	E	90	95	anti-parallel
Strand 5	F	99	104	anti-parallel
Strand 6	F	110	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HDJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDJ