Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HDK entry

There are 4 chains in PDB entry 8HDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	ARG 794
B	ALA 29	GLN 799
C	LYS 25	GLN 796
D	ALA 29	ASN 800

There are 85 helices in PDB entry 8HDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	53	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	104	115	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	146	159	Right-handed alpha
Helix 7	AA7	A	170	187	Right-handed alpha
Helix 8	AA8	A	204	213	Right-handed alpha
Helix 9	AA9	A	224	238	Right-handed alpha
Helix 10	AB1	A	251	254	Right-handed 310
Helix 11	AB2	A	255	262	Right-handed alpha
Helix 12	AB3	A	276	298	Right-handed alpha
Helix 13	AB4	A	317	327	Right-handed alpha
Helix 14	AB5	A	457	471	Right-handed alpha
Helix 15	AB6	A	499	507	Right-handed alpha
Helix 16	AB7	A	520	525	Right-handed alpha
Helix 17	AB8	A	669	674	Right-handed alpha
Helix 18	AB9	A	687	696	Right-handed alpha
Helix 19	AC1	A	699	710	Right-handed alpha
Helix 20	AC2	A	713	723	Right-handed alpha
Helix 21	AC3	A	733	744	Right-handed alpha
Helix 22	AC4	A	767	782	Right-handed alpha
Helix 23	AC5	A	783	793	Right-handed alpha
Helix 24	AC6	B	42	53	Right-handed alpha
Helix 25	AC7	B	73	88	Right-handed alpha
Helix 26	AC8	B	102	115	Right-handed alpha
Helix 27	AC9	B	145	160	Right-handed alpha
Helix 28	AD1	B	174	189	Right-handed alpha
Helix 29	AD2	B	212	219	Right-handed alpha
Helix 30	AD3	B	229	244	Right-handed alpha
Helix 31	AD4	B	280	282	Right-handed 310
Helix 32	AD5	B	284	308	Right-handed alpha
Helix 33	AD6	B	325	335	Right-handed alpha
Helix 34	AD7	B	456	470	Right-handed alpha
Helix 35	AD8	B	492	500	Right-handed alpha
Helix 36	AD9	B	513	518	Right-handed alpha
Helix 37	AE1	B	665	670	Right-handed alpha
Helix 38	AE2	B	686	696	Right-handed alpha
Helix 39	AE3	B	696	705	Right-handed alpha
Helix 40	AE4	B	710	721	Right-handed alpha
Helix 41	AE5	B	730	739	Right-handed alpha
Helix 42	AE6	B	768	783	Right-handed alpha
Helix 43	AE7	B	784	794	Right-handed alpha
Helix 44	AE8	C	37	54	Right-handed alpha
Helix 45	AE9	C	70	82	Right-handed alpha
Helix 46	AF1	C	103	114	Right-handed alpha
Helix 47	AF2	C	143	159	Right-handed alpha
Helix 48	AF3	C	170	186	Right-handed alpha
Helix 49	AF4	C	203	213	Right-handed alpha
Helix 50	AF5	C	224	238	Right-handed alpha
Helix 51	AF6	C	251	254	Right-handed 310
Helix 52	AF7	C	255	262	Right-handed alpha
Helix 53	AF8	C	276	297	Right-handed alpha
Helix 54	AF9	C	316	327	Right-handed alpha
Helix 55	AG1	C	457	471	Right-handed alpha
Helix 56	AG2	C	499	507	Right-handed alpha
Helix 57	AG3	C	520	525	Right-handed alpha
Helix 58	AG4	C	669	674	Right-handed alpha
Helix 59	AG5	C	687	696	Right-handed alpha
Helix 60	AG6	C	699	710	Right-handed alpha
Helix 61	AG7	C	713	723	Right-handed alpha
Helix 62	AG8	C	733	744	Right-handed alpha
Helix 63	AG9	C	767	783	Right-handed alpha
Helix 64	AH1	C	783	793	Right-handed alpha
Helix 65	AH2	D	41	49	Right-handed alpha
Helix 66	AH3	D	73	88	Right-handed alpha
Helix 67	AH4	D	103	116	Right-handed alpha
Helix 68	AH5	D	145	160	Right-handed alpha
Helix 69	AH6	D	174	187	Right-handed alpha
Helix 70	AH7	D	208	219	Right-handed alpha
Helix 71	AH8	D	229	244	Right-handed alpha
Helix 72	AH9	D	280	283	Right-handed 310
Helix 73	AI1	D	284	308	Right-handed alpha
Helix 74	AI2	D	325	336	Right-handed alpha
Helix 75	AI3	D	456	470	Right-handed alpha
Helix 76	AI4	D	486	490	Right-handed 310
Helix 77	AI5	D	492	500	Right-handed alpha
Helix 78	AI6	D	513	520	Right-handed alpha
Helix 79	AI7	D	665	670	Right-handed alpha
Helix 80	AI8	D	686	696	Right-handed alpha
Helix 81	AI9	D	696	705	Right-handed alpha
Helix 82	AJ1	D	710	721	Right-handed alpha
Helix 83	AJ2	D	730	740	Right-handed alpha
Helix 84	AJ3	D	769	783	Right-handed alpha
Helix 85	AJ4	D	784	794	Right-handed alpha

There are 31 sheets in PDB entry 8HDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	30	33	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	138	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	218	222	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	267	271	parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	360	367	anti-parallel
Strand 5	A	373	374	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	A	397	401	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	453	456	anti-parallel
Strand 3	A	433	436	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	528	543	anti-parallel
Strand 4	A	746	762	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	31	37	parallel
Strand 3	B	90	97	parallel
Strand 4	B	119	122	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	201	first strand
Strand 2	B	164	170	parallel
Strand 3	B	223	227	parallel
Strand 4	B	251	253	parallel
Strand 5	B	273	278	parallel
Strand 6	B	358	363	anti-parallel
Strand 7	B	369	376	anti-parallel
Strand 8	B	379	382	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	396	397	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	477	first strand
Strand 2	B	404	407	parallel
Strand 3	B	505	506	parallel
Strand 4	B	754	763	anti-parallel
Strand 5	B	521	536	anti-parallel
Strand 6	B	725	729	anti-parallel
Strand 7	B	680	681	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	477	first strand
Strand 2	B	404	407	parallel
Strand 3	B	505	506	parallel
Strand 4	B	754	763	anti-parallel
Strand 5	B	521	536	anti-parallel
Strand 6	B	744	746	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	452	455	anti-parallel
Strand 3	B	431	433	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	C	26	32	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	163	168	parallel
Strand 3	C	218	222	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	271	first strand
Strand 2	C	351	357	anti-parallel
Strand 3	C	360	368	anti-parallel
Strand 4	C	371	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	338	339	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	478	first strand
Strand 2	C	398	402	parallel
Strand 3	C	512	513	parallel
Strand 4	C	761	762	anti-parallel
Strand 5	C	528	529	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	434	438	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	494	497	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	756	758	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	31	35	parallel
Strand 3	D	92	95	parallel
Strand 4	D	119	121	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	201	first strand
Strand 2	D	165	170	parallel
Strand 3	D	224	227	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	278	first strand
Strand 2	D	358	363	anti-parallel
Strand 3	D	369	376	anti-parallel
Strand 4	D	379	382	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	407	first strand
Strand 2	D	472	477	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	417	first strand
Strand 2	D	452	455	anti-parallel
Strand 3	D	431	433	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	506	first strand
Strand 2	D	754	763	anti-parallel
Strand 3	D	521	535	anti-parallel
Strand 4	D	725	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDK