Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HDT entry

There are 14 chains in PDB entry 8HDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 11	TYR 310
B	MET 11	TYR 310
C	MET 11	TYR 310
D	MET 11	TYR 310
E	MET 11	TYR 310
F	MET 11	TYR 310
G	MET 1	ALA 166
H	MET 1	ALA 166
I	MET 1	ALA 166
J	MET 1	ALA 166
K	MET 1	ALA 166
L	MET 1	ALA 166
M	MET 1	ALA 166
N	MET 11	TYR 310

There are 51 helices in PDB entry 8HDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	110	Right-handed alpha
Helix 2	AA2	A	114	137	Right-handed alpha
Helix 3	AA3	A	167	186	Right-handed alpha
Helix 4	AA4	A	199	208	Right-handed alpha
Helix 5	AA5	A	217	226	Right-handed alpha
Helix 6	AA6	A	226	232	Right-handed alpha
Helix 7	AA7	A	300	302	Right-handed 310
Helix 8	AA8	B	102	110	Right-handed alpha
Helix 9	AA9	B	114	138	Right-handed alpha
Helix 10	AB1	B	167	186	Right-handed alpha
Helix 11	AB2	B	199	208	Right-handed alpha
Helix 12	AB3	B	217	226	Right-handed alpha
Helix 13	AB4	B	226	232	Right-handed alpha
Helix 14	AB5	B	300	302	Right-handed 310
Helix 15	AB6	C	102	111	Right-handed alpha
Helix 16	AB7	C	114	137	Right-handed alpha
Helix 17	AB8	C	167	186	Right-handed alpha
Helix 18	AB9	C	199	208	Right-handed alpha
Helix 19	AC1	C	217	223	Right-handed alpha
Helix 20	AC2	C	226	232	Right-handed alpha
Helix 21	AC3	C	300	302	Right-handed 310
Helix 22	AC4	D	102	111	Right-handed alpha
Helix 23	AC5	D	114	137	Right-handed alpha
Helix 24	AC6	D	167	186	Right-handed alpha
Helix 25	AC7	D	199	208	Right-handed alpha
Helix 26	AC8	D	218	225	Right-handed 310
Helix 27	AC9	D	226	232	Right-handed alpha
Helix 28	AD1	D	300	302	Right-handed 310
Helix 29	AD2	E	102	106	Right-handed alpha
Helix 30	AD3	E	114	137	Right-handed alpha
Helix 31	AD4	E	167	186	Right-handed alpha
Helix 32	AD5	E	199	208	Right-handed alpha
Helix 33	AD6	E	218	220	Right-handed 310
Helix 34	AD7	E	221	226	Right-handed alpha
Helix 35	AD8	E	226	232	Right-handed alpha
Helix 36	AD9	E	300	302	Right-handed 310
Helix 37	AE1	F	102	112	Right-handed alpha
Helix 38	AE2	F	114	137	Right-handed alpha
Helix 39	AE3	F	167	186	Right-handed alpha
Helix 40	AE4	F	199	208	Right-handed alpha
Helix 41	AE5	F	218	220	Right-handed 310
Helix 42	AE6	F	221	226	Right-handed alpha
Helix 43	AE7	F	226	232	Right-handed alpha
Helix 44	AE8	F	300	302	Right-handed 310
Helix 45	AE9	N	102	110	Right-handed alpha
Helix 46	AF1	N	114	137	Right-handed alpha
Helix 47	AF2	N	167	184	Right-handed alpha
Helix 48	AF3	N	198	205	Right-handed alpha
Helix 49	AF4	N	217	224	Right-handed alpha
Helix 50	AF5	N	226	233	Right-handed alpha
Helix 51	AF6	N	300	302	Right-handed 310

There are 60 sheets in PDB entry 8HDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	B	55	65	parallel
Strand 3	A	30	31	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	B	55	65	parallel
Strand 3	B	80	90	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	265	268	parallel
Strand 3	A	296	298	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	90	first strand
Strand 2	A	55	61	anti-parallel
Strand 3	E	24	31	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	E	92	95	anti-parallel
Strand 3	E	289	293	anti-parallel
Strand 4	E	271	275	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	289	293	anti-parallel
Strand 3	A	92	95	anti-parallel
Strand 4	B	68	69	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	284	287	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	304	308	parallel
Strand 3	A	254	258	anti-parallel
Strand 4	A	194	198	anti-parallel
Strand 5	A	237	241	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	C	55	64	parallel
Strand 3	B	30	31	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	C	55	64	parallel
Strand 3	C	81	90	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	265	268	parallel
Strand 3	B	297	298	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	92	95	anti-parallel
Strand 4	C	68	69	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	279	281	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	304	308	parallel
Strand 3	B	254	258	anti-parallel
Strand 4	B	194	198	anti-parallel
Strand 5	B	237	241	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	31	first strand
Strand 2	D	55	64	parallel
Strand 3	D	81	90	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	267	268	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	289	293	anti-parallel
Strand 3	C	92	95	anti-parallel
Strand 4	D	68	69	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	279	280	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	304	308	parallel
Strand 3	C	254	258	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	237	241	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	31	first strand
Strand 2	F	55	64	parallel
Strand 3	F	81	90	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	265	268	parallel
Strand 3	D	297	298	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	289	293	anti-parallel
Strand 3	D	92	95	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	284	286	anti-parallel
Strand 3	D	279	280	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	304	308	parallel
Strand 3	D	254	258	anti-parallel
Strand 4	D	194	198	anti-parallel
Strand 5	D	237	241	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	265	268	parallel
Strand 3	E	297	298	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	90	first strand
Strand 2	E	55	64	anti-parallel
Strand 3	F	23	25	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	90	first strand
Strand 2	E	55	64	anti-parallel
Strand 3	F	30	31	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	F	93	95	anti-parallel
Strand 3	F	289	292	anti-parallel
Strand 4	F	271	275	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	284	286	anti-parallel
Strand 3	E	279	281	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	304	308	parallel
Strand 3	E	254	258	anti-parallel
Strand 4	E	194	198	anti-parallel
Strand 5	E	237	241	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	265	268	parallel
Strand 3	F	296	298	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	101	first strand
Strand 2	F	284	287	anti-parallel
Strand 3	F	279	281	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	157	first strand
Strand 2	F	304	308	parallel
Strand 3	F	254	258	anti-parallel
Strand 4	F	194	198	anti-parallel
Strand 5	F	237	241	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	93	94	anti-parallel
Strand 3	G	69	71	anti-parallel
Strand 4	G	44	47	anti-parallel
Strand 5	G	53	55	anti-parallel
Strand 6	G	32	33	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	102	first strand
Strand 2	G	151	156	anti-parallel
Strand 3	G	140	142	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	125	first strand
Strand 2	G	116	118	anti-parallel
Strand 3	G	134	136	anti-parallel
Strand 4	G	163	165	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	29	first strand
Strand 2	H	93	94	anti-parallel
Strand 3	H	69	71	anti-parallel
Strand 4	H	44	47	anti-parallel
Strand 5	H	53	55	anti-parallel
Strand 6	H	32	33	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	102	first strand
Strand 2	H	151	156	anti-parallel
Strand 3	H	140	142	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	125	first strand
Strand 2	H	116	118	anti-parallel
Strand 3	H	134	136	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	29	first strand
Strand 2	I	93	94	anti-parallel
Strand 3	I	69	71	anti-parallel
Strand 4	I	44	47	anti-parallel
Strand 5	I	53	55	anti-parallel
Strand 6	I	32	33	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	102	first strand
Strand 2	I	151	156	anti-parallel
Strand 3	I	140	142	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	125	first strand
Strand 2	I	116	118	anti-parallel
Strand 3	I	134	136	anti-parallel
Strand 4	I	163	165	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	29	first strand
Strand 2	J	93	94	anti-parallel
Strand 3	J	69	71	anti-parallel
Strand 4	J	44	47	anti-parallel
Strand 5	J	53	55	anti-parallel
Strand 6	J	32	33	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	102	first strand
Strand 2	J	151	156	anti-parallel
Strand 3	J	140	142	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	125	first strand
Strand 2	J	116	118	anti-parallel
Strand 3	J	134	136	anti-parallel
Strand 4	J	163	165	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	29	first strand
Strand 2	K	93	94	anti-parallel
Strand 3	K	69	71	anti-parallel
Strand 4	K	44	47	anti-parallel
Strand 5	K	53	55	anti-parallel
Strand 6	K	32	33	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	98	102	first strand
Strand 2	K	151	156	anti-parallel
Strand 3	K	140	142	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	125	first strand
Strand 2	K	116	118	anti-parallel
Strand 3	K	134	136	anti-parallel
Strand 4	K	163	165	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	29	first strand
Strand 2	L	93	94	anti-parallel
Strand 3	L	69	71	anti-parallel
Strand 4	L	44	47	anti-parallel
Strand 5	L	53	55	anti-parallel
Strand 6	L	32	33	parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	98	102	first strand
Strand 2	L	151	156	anti-parallel
Strand 3	L	140	142	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	125	first strand
Strand 2	L	116	118	anti-parallel
Strand 3	L	134	136	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	28	29	first strand
Strand 2	M	93	94	anti-parallel
Strand 3	M	69	71	anti-parallel
Strand 4	M	44	47	anti-parallel
Strand 5	M	53	55	anti-parallel
Strand 6	M	32	33	parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	98	102	first strand
Strand 2	M	151	156	anti-parallel
Strand 3	M	140	142	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	125	first strand
Strand 2	M	116	118	anti-parallel
Strand 3	M	134	136	anti-parallel
Strand 4	M	163	165	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	55	59	first strand
Strand 2	N	86	90	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	62	64	first strand
Strand 2	N	81	83	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	92	95	first strand
Strand 2	N	289	293	anti-parallel
Strand 3	N	271	275	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	98	101	first strand
Strand 2	N	284	287	anti-parallel
Strand 3	N	279	280	anti-parallel

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There are 5 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	157	first strand
Strand 2	N	304	308	parallel
Strand 3	N	254	258	anti-parallel
Strand 4	N	194	197	anti-parallel
Strand 5	N	237	240	parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	265	267	first strand
Strand 2	N	296	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDT