Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HDU entry

There are 5 chains in PDB entry 8HDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 38LYS 193
B
 ASP 36GLU 197
C
 LYS 38LEU 196
D
 LYS 40LEU 196
E
 LYS 40LYS 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8HDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 58Right-handed alpha
Helix 2
AA2
A
58 76Right-handed alpha
Helix 3
AA3
A
78 91Right-handed alpha
Helix 4
AA4
A
95 113Right-handed alpha
Helix 5
AA5
A
115 136Right-handed alpha
Helix 6
AA6
A
137 154Right-handed alpha
Helix 7
AA7
A
155 169Right-handed alpha
Helix 8
AA8
A
171 193Right-handed alpha
Helix 9
AA9
B
37 58Right-handed alpha
Helix 10
AB1
B
58 76Right-handed alpha
Helix 11
AB2
B
78 91Right-handed alpha
Helix 12
AB3
B
95 113Right-handed alpha
Helix 13
AB4
B
115 136Right-handed alpha
Helix 14
AB5
B
137 154Right-handed alpha
Helix 15
AB6
B
155 169Right-handed alpha
Helix 16
AB7
B
171 194Right-handed alpha
Helix 17
AB8
C
39 58Right-handed alpha
Helix 18
AB9
C
58 76Right-handed alpha
Helix 19
AC1
C
78 91Right-handed alpha
Helix 20
AC2
C
95 113Right-handed alpha
Helix 21
AC3
C
115 136Right-handed alpha
Helix 22
AC4
C
137 154Right-handed alpha
Helix 23
AC5
C
155 169Right-handed alpha
Helix 24
AC6
C
171 194Right-handed alpha
Helix 25
AC7
D
41 58Right-handed alpha
Helix 26
AC8
D
58 76Right-handed alpha
Helix 27
AC9
D
78 91Right-handed alpha
Helix 28
AD1
D
95 113Right-handed alpha
Helix 29
AD2
D
115 136Right-handed alpha
Helix 30
AD3
D
137 154Right-handed alpha
Helix 31
AD4
D
155 169Right-handed alpha
Helix 32
AD5
D
171 194Right-handed alpha
Helix 33
AD6
E
41 58Right-handed alpha
Helix 34
AD7
E
58 76Right-handed alpha
Helix 35
AD8
E
78 91Right-handed alpha
Helix 36
AD9
E
95 113Right-handed alpha
Helix 37
AE1
E
115 136Right-handed alpha
Helix 38
AE2
E
137 154Right-handed alpha
Helix 39
AE3
E
155 169Right-handed alpha
Helix 40
AE4
E
171 193Right-handed alpha
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There are no sheets in PDB entry 8HDU
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