Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HDZ entry

There are 3 chains in PDB entry 8HDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 813
C	MET 1	GLU 426
B	MET 1	TYR 218

There are 47 helices in PDB entry 8HDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	108	117	Right-handed alpha
Helix 3	AA3	A	144	149	Right-handed alpha
Helix 4	AA4	A	206	208	Right-handed 310
Helix 5	AA5	A	209	220	Right-handed alpha
Helix 6	AA6	A	226	230	Right-handed 310
Helix 7	AA7	A	240	253	Right-handed alpha
Helix 8	AA8	A	267	281	Right-handed alpha
Helix 9	AA9	A	331	339	Right-handed alpha
Helix 10	AB1	A	345	354	Right-handed alpha
Helix 11	AB2	A	380	391	Right-handed alpha
Helix 12	AB3	A	439	445	Right-handed alpha
Helix 13	AB4	A	448	473	Right-handed alpha
Helix 14	AB5	A	474	487	Right-handed alpha
Helix 15	AB6	A	497	514	Right-handed alpha
Helix 16	AB7	A	552	562	Right-handed alpha
Helix 17	AB8	A	576	591	Right-handed alpha
Helix 18	AB9	A	621	642	Right-handed alpha
Helix 19	AC1	A	646	665	Right-handed alpha
Helix 20	AC2	A	666	672	Right-handed alpha
Helix 21	AC3	A	680	703	Right-handed alpha
Helix 22	AC4	A	763	781	Right-handed alpha
Helix 23	AC5	C	8	11	Right-handed 310
Helix 24	AC6	C	12	19	Right-handed alpha
Helix 25	AC7	C	26	37	Right-handed alpha
Helix 26	AC8	C	56	59	Right-handed 310
Helix 27	AC9	C	107	121	Right-handed alpha
Helix 28	AD1	C	132	135	Right-handed 310
Helix 29	AD2	C	147	159	Right-handed alpha
Helix 30	AD3	C	177	188	Right-handed alpha
Helix 31	AD4	C	249	257	Right-handed alpha
Helix 32	AD5	C	285	298	Right-handed alpha
Helix 33	AD6	C	316	323	Right-handed alpha
Helix 34	AD7	C	330	341	Right-handed alpha
Helix 35	AD8	C	341	350	Right-handed alpha
Helix 36	AD9	C	352	361	Right-handed alpha
Helix 37	AE1	C	367	374	Right-handed alpha
Helix 38	AE2	C	392	396	Right-handed 310
Helix 39	AE3	C	397	406	Right-handed alpha
Helix 40	AE4	C	406	425	Right-handed alpha
Helix 41	AE5	B	16	18	Right-handed 310
Helix 42	AE6	B	19	32	Right-handed alpha
Helix 43	AE7	B	46	50	Right-handed 310
Helix 44	AE8	B	86	101	Right-handed alpha
Helix 45	AE9	B	139	150	Right-handed alpha
Helix 46	AF1	B	165	170	Right-handed alpha
Helix 47	AF2	B	194	205	Right-handed alpha

There are 17 sheets in PDB entry 8HDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	2	10	anti-parallel
Strand 3	A	17	23	anti-parallel
Strand 4	A	29	35	anti-parallel
Strand 5	A	139	141	parallel
Strand 6	A	133	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	83	93	anti-parallel
Strand 3	A	57	67	anti-parallel
Strand 4	A	515	518	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	574	parallel
Strand 3	A	610	616	anti-parallel
Strand 4	A	596	601	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	236	239	parallel
Strand 3	A	197	204	parallel
Strand 4	A	183	191	anti-parallel
Strand 5	A	162	169	anti-parallel
Strand 6	A	258	261	parallel
Strand 7	A	327	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	294	295	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	302	first strand
Strand 2	A	317	320	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	368	371	anti-parallel
Strand 4	A	355	360	anti-parallel
Strand 5	A	428	432	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	401	404	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	734	first strand
Strand 2	A	711	713	anti-parallel
Strand 3	A	706	708	anti-parallel
Strand 4	A	742	750	anti-parallel
Strand 5	A	754	759	anti-parallel
Strand 6	A	544	550	anti-parallel
Strand 7	A	789	802	anti-parallel
Strand 8	A	805	811	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	207	210	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	175	176	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	170	first strand
Strand 2	C	74	82	anti-parallel
Strand 3	C	194	201	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	124	130	anti-parallel
Strand 3	C	137	143	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	237	239	anti-parallel
Strand 3	C	244	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	383	389	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	62	66	parallel
Strand 3	B	154	158	parallel
Strand 4	B	176	179	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HDZ