Analysis of interatomic Contacts of Structural Units in PDB entry:
8HE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HE2 entry

There is 1 chain in PDB entry 8HE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 41GLU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8HE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 75Right-handed alpha
Helix 2
AA2
A
90 93Right-handed 310
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
122 142Right-handed alpha
Helix 6
AA6
A
150 154Right-handed 310
Helix 7
AA7
A
156 166Right-handed alpha
Helix 8
AA8
A
187 196Right-handed alpha
Helix 9
AA9
A
210 216Right-handed alpha
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
244 247Right-handed 310
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There are 4 sheets in PDB entry 8HE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
170 172parallel
Strand 3
A
147 148parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
79 83parallel
Strand 3
A
52 58parallel
Strand 4
A
203 207parallel
Strand 5
A
176 177parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
79 83parallel
Strand 3
A
52 58parallel
Strand 4
A
231 232parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
249 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il