Analysis of interatomic Contacts of Structural Units in PDB entry:
8HED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HED entry

There are 3 chains in PDB entry 8HED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 331	SER 530
F	GLN 1	LYS 110
G	GLN 1	SER 117

There are 9 helices in PDB entry 8HED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	338	343	Right-handed alpha
Helix 2	AA2	B	349	353	Right-handed 310
Helix 3	AA3	B	365	371	Right-handed alpha
Helix 4	AA4	B	405	410	Right-handed 310
Helix 5	AA5	B	417	422	Right-handed alpha
Helix 6	AA6	B	438	443	Right-handed alpha
Helix 7	AA7	B	502	505	Right-handed 310
Helix 8	AA8	F	78	82	Right-handed 310
Helix 9	AA9	G	27	31	Right-handed 310

There are 9 sheets in PDB entry 8HED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	61	66	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	105	110	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	32	37	anti-parallel
Strand 5	F	44	48	anti-parallel
Strand 6	F	52	53	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	105	110	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	18	22	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	66	69	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	111	115	parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	44	50	anti-parallel
Strand 6	G	56	58	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	111	115	parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HED

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HED