Analysis of interatomic Contacts of Structural Units in PDB entry:
8HEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HEE entry

There are 15 chains in PDB entry 8HEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	LYS 210
B	GLU 52	GLU 218
C	GLY 1	GLN 221
D	GLN 25	LYS 210
E	GLN 25	LYS 210
F	GLN 25	LYS 210
G	GLN 25	LYS 210
L	GLY 1	GLN 221
M	GLY 1	GLN 221
N	GLY 1	GLN 221
O	GLY 1	GLN 221
H	GLU 52	GLU 218
I	GLU 52	GLU 218
J	GLU 52	GLU 218
K	GLU 52	GLU 218

There are 51 helices in PDB entry 8HEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	31	36	Right-handed alpha
Helix 3	AA3	A	52	56	Right-handed 310
Helix 4	AA4	A	60	68	Right-handed alpha
Helix 5	AA5	A	94	100	Right-handed 310
Helix 6	AA6	B	89	97	Right-handed alpha
Helix 7	AA7	B	135	143	Right-handed 310
Helix 8	AA8	C	43	51	Right-handed alpha
Helix 9	AA9	C	89	96	Right-handed alpha
Helix 10	AB1	C	138	143	Right-handed 310
Helix 11	AB2	D	27	30	Right-handed 310
Helix 12	AB3	D	31	36	Right-handed alpha
Helix 13	AB4	D	52	56	Right-handed 310
Helix 14	AB5	D	60	68	Right-handed alpha
Helix 15	AB6	D	94	100	Right-handed 310
Helix 16	AB7	E	27	30	Right-handed 310
Helix 17	AB8	E	31	36	Right-handed alpha
Helix 18	AB9	E	52	56	Right-handed 310
Helix 19	AC1	E	60	68	Right-handed alpha
Helix 20	AC2	E	94	100	Right-handed 310
Helix 21	AC3	F	27	30	Right-handed 310
Helix 22	AC4	F	31	36	Right-handed alpha
Helix 23	AC5	F	52	56	Right-handed 310
Helix 24	AC6	F	60	68	Right-handed alpha
Helix 25	AC7	F	94	100	Right-handed 310
Helix 26	AC8	G	27	30	Right-handed 310
Helix 27	AC9	G	31	36	Right-handed alpha
Helix 28	AD1	G	52	56	Right-handed 310
Helix 29	AD2	G	60	68	Right-handed alpha
Helix 30	AD3	G	94	100	Right-handed 310
Helix 31	AD4	L	43	51	Right-handed alpha
Helix 32	AD5	L	83	87	Right-handed 310
Helix 33	AD6	L	89	96	Right-handed alpha
Helix 34	AD7	L	138	143	Right-handed 310
Helix 35	AD8	M	43	51	Right-handed alpha
Helix 36	AD9	M	89	96	Right-handed alpha
Helix 37	AE1	M	138	143	Right-handed 310
Helix 38	AE2	N	43	51	Right-handed alpha
Helix 39	AE3	N	89	96	Right-handed alpha
Helix 40	AE4	N	138	143	Right-handed 310
Helix 41	AE5	O	43	51	Right-handed alpha
Helix 42	AE6	O	89	96	Right-handed alpha
Helix 43	AE7	O	138	143	Right-handed 310
Helix 44	AE8	H	89	97	Right-handed alpha
Helix 45	AE9	H	135	143	Right-handed 310
Helix 46	AF1	I	89	97	Right-handed alpha
Helix 47	AF2	I	135	143	Right-handed 310
Helix 48	AF3	J	89	97	Right-handed alpha
Helix 49	AF4	J	135	143	Right-handed 310
Helix 50	AF5	K	89	97	Right-handed alpha
Helix 51	AF6	K	135	143	Right-handed 310

There are 50 sheets in PDB entry 8HEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	171	187	anti-parallel
Strand 3	A	69	83	anti-parallel
Strand 4	A	113	117	anti-parallel
Strand 5	O	23	24	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	69	83	anti-parallel
Strand 3	A	171	187	anti-parallel
Strand 4	O	40	41	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	166	168	anti-parallel
Strand 3	A	86	89	anti-parallel
Strand 4	A	105	106	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	205	213	anti-parallel
Strand 3	B	98	112	anti-parallel
Strand 4	B	197	203	anti-parallel
Strand 5	B	62	69	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	205	213	anti-parallel
Strand 3	B	98	112	anti-parallel
Strand 4	B	155	160	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	177	188	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	145	148	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	L	3	7	parallel
Strand 3	M	3	7	parallel
Strand 4	N	3	7	parallel
Strand 5	O	3	7	parallel
Strand 6	C	3	7	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	69	73	anti-parallel
Strand 4	D	126	127	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	63	65	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	105	111	anti-parallel
Strand 4	C	155	160	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	184	192	anti-parallel
Strand 3	C	119	126	anti-parallel
Strand 4	C	144	149	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	100	102	anti-parallel
Strand 3	C	211	212	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	171	178	anti-parallel
Strand 3	D	76	83	anti-parallel
Strand 4	D	113	117	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	165	168	anti-parallel
Strand 3	D	86	89	anti-parallel
Strand 4	D	105	106	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	171	178	anti-parallel
Strand 3	E	76	83	anti-parallel
Strand 4	E	113	117	anti-parallel
Strand 5	L	23	24	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	166	168	anti-parallel
Strand 3	E	86	89	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	127	first strand
Strand 2	E	69	73	anti-parallel
Strand 3	E	183	187	anti-parallel
Strand 4	L	40	41	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	171	178	anti-parallel
Strand 3	F	76	83	anti-parallel
Strand 4	F	113	117	anti-parallel
Strand 5	M	23	24	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	166	168	anti-parallel
Strand 3	F	86	89	anti-parallel
Strand 4	F	105	106	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	69	73	anti-parallel
Strand 3	F	183	187	anti-parallel
Strand 4	M	40	41	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	171	178	anti-parallel
Strand 3	G	76	83	anti-parallel
Strand 4	G	113	117	anti-parallel
Strand 5	N	23	24	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	50	first strand
Strand 2	G	166	168	anti-parallel
Strand 3	G	86	89	anti-parallel
Strand 4	G	105	106	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	127	first strand
Strand 2	G	69	73	anti-parallel
Strand 3	G	183	187	anti-parallel
Strand 4	N	40	41	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	199	206	anti-parallel
Strand 3	L	63	65	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	199	206	anti-parallel
Strand 3	L	105	111	anti-parallel
Strand 4	L	155	160	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	73	78	first strand
Strand 2	L	184	192	anti-parallel
Strand 3	L	119	126	anti-parallel
Strand 4	L	144	149	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	170	first strand
Strand 2	L	100	102	anti-parallel
Strand 3	L	211	212	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	199	206	anti-parallel
Strand 3	M	63	65	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	199	206	anti-parallel
Strand 3	M	105	111	anti-parallel
Strand 4	M	155	160	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	79	first strand
Strand 2	M	183	192	anti-parallel
Strand 3	M	119	126	anti-parallel
Strand 4	M	144	149	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	169	170	first strand
Strand 2	M	100	102	anti-parallel
Strand 3	M	211	212	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	199	206	anti-parallel
Strand 3	N	63	65	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	199	206	anti-parallel
Strand 3	N	105	111	anti-parallel
Strand 4	N	155	160	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	78	first strand
Strand 2	N	184	192	anti-parallel
Strand 3	N	119	126	anti-parallel
Strand 4	N	144	149	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	170	first strand
Strand 2	N	100	102	anti-parallel
Strand 3	N	211	212	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	53	54	first strand
Strand 2	O	200	206	anti-parallel
Strand 3	O	105	111	anti-parallel
Strand 4	O	155	160	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	79	first strand
Strand 2	O	183	192	anti-parallel
Strand 3	O	119	126	anti-parallel
Strand 4	O	144	149	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	100	101	first strand
Strand 2	O	169	170	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	205	213	anti-parallel
Strand 3	H	98	112	anti-parallel
Strand 4	H	197	203	anti-parallel
Strand 5	H	62	69	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	205	213	anti-parallel
Strand 3	H	98	112	anti-parallel
Strand 4	H	155	160	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	82	first strand
Strand 2	H	177	188	anti-parallel
Strand 3	H	118	127	anti-parallel
Strand 4	H	145	148	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	205	213	anti-parallel
Strand 3	I	98	112	anti-parallel
Strand 4	I	197	203	anti-parallel
Strand 5	I	62	69	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	205	213	anti-parallel
Strand 3	I	98	112	anti-parallel
Strand 4	I	155	160	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	82	first strand
Strand 2	I	177	188	anti-parallel
Strand 3	I	118	127	anti-parallel
Strand 4	I	145	148	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	205	213	anti-parallel
Strand 3	J	98	112	anti-parallel
Strand 4	J	197	203	anti-parallel
Strand 5	J	62	69	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	205	213	anti-parallel
Strand 3	J	98	112	anti-parallel
Strand 4	J	155	160	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	82	first strand
Strand 2	J	177	188	anti-parallel
Strand 3	J	118	127	anti-parallel
Strand 4	J	145	148	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	205	213	anti-parallel
Strand 3	K	98	112	anti-parallel
Strand 4	K	197	203	anti-parallel
Strand 5	K	62	69	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	205	213	anti-parallel
Strand 3	K	98	112	anti-parallel
Strand 4	K	155	160	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	82	first strand
Strand 2	K	177	188	anti-parallel
Strand 3	K	118	127	anti-parallel
Strand 4	K	145	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HEE