Analysis of interatomic Contacts of Structural Units in PDB entry:
8HF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HF0 entry

There are 7 chains in PDB entry 8HF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ALA 1722
B	ILE 344	ILE 359
C	MET 186	ILE 311
D	GLU 2	ALA 1722
E	GLU 188	ILE 311
P	G 1	U 47
N	G 3	U 52

There are157 helices in PDB entry 8HF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	31	45	Right-handed alpha
Helix 3	AA3	A	46	50	Right-handed 310
Helix 4	AA4	A	66	81	Right-handed alpha
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	98	109	Right-handed alpha
Helix 7	AA7	A	116	125	Right-handed alpha
Helix 8	AA8	A	129	131	Right-handed 310
Helix 9	AA9	A	140	144	Right-handed 310
Helix 10	AB1	A	148	156	Right-handed alpha
Helix 11	AB2	A	157	159	Right-handed 310
Helix 12	AB3	A	161	165	Right-handed 310
Helix 13	AB4	A	183	195	Right-handed alpha
Helix 14	AB5	A	204	213	Right-handed alpha
Helix 15	AB6	A	232	251	Right-handed alpha
Helix 16	AB7	A	271	292	Right-handed alpha
Helix 17	AB8	A	292	314	Right-handed alpha
Helix 18	AB9	A	316	345	Right-handed alpha
Helix 19	AC1	A	350	362	Right-handed alpha
Helix 20	AC2	A	364	379	Right-handed alpha
Helix 21	AC3	A	394	410	Right-handed alpha
Helix 22	AC4	A	445	452	Right-handed alpha
Helix 23	AC5	A	484	495	Right-handed alpha
Helix 24	AC6	A	510	535	Right-handed alpha
Helix 25	AC7	A	543	550	Right-handed alpha
Helix 26	AC8	A	567	569	Right-handed 310
Helix 27	AC9	A	570	582	Right-handed alpha
Helix 28	AD1	A	598	607	Right-handed alpha
Helix 29	AD2	A	608	611	Right-handed 310
Helix 30	AD3	A	637	656	Right-handed alpha
Helix 31	AD4	A	667	680	Right-handed alpha
Helix 32	AD5	A	681	687	Right-handed 310
Helix 33	AD6	A	710	714	Right-handed 310
Helix 34	AD7	A	741	749	Right-handed alpha
Helix 35	AD8	A	792	810	Right-handed alpha
Helix 36	AD9	A	845	852	Right-handed alpha
Helix 37	AE1	A	862	869	Right-handed alpha
Helix 38	AE2	A	873	878	Right-handed alpha
Helix 39	AE3	A	916	930	Right-handed alpha
Helix 40	AE4	A	960	967	Right-handed alpha
Helix 41	AE5	A	972	974	Right-handed 310
Helix 42	AE6	A	983	990	Right-handed alpha
Helix 43	AE7	A	991	1016	Right-handed alpha
Helix 44	AE8	A	1174	1182	Right-handed alpha
Helix 45	AE9	A	1190	1199	Right-handed alpha
Helix 46	AF1	A	1209	1232	Right-handed alpha
Helix 47	AF2	A	1236	1248	Right-handed alpha
Helix 48	AF3	A	1249	1259	Right-handed alpha
Helix 49	AF4	A	1260	1266	Right-handed 310
Helix 50	AF5	A	1272	1277	Right-handed alpha
Helix 51	AF6	A	1285	1295	Right-handed alpha
Helix 52	AF7	A	1295	1300	Right-handed alpha
Helix 53	AF8	A	1303	1310	Right-handed alpha
Helix 54	AF9	A	1313	1319	Right-handed alpha
Helix 55	AG1	A	1324	1339	Right-handed alpha
Helix 56	AG2	A	1348	1357	Right-handed alpha
Helix 57	AG3	A	1363	1387	Right-handed alpha
Helix 58	AG4	A	1387	1393	Right-handed alpha
Helix 59	AG5	A	1403	1407	Right-handed 310
Helix 60	AG6	A	1422	1430	Right-handed alpha
Helix 61	AG7	A	1432	1441	Right-handed alpha
Helix 62	AG8	A	1447	1455	Right-handed alpha
Helix 63	AG9	A	1468	1491	Right-handed alpha
Helix 64	AH1	A	1495	1508	Right-handed alpha
Helix 65	AH2	A	1508	1519	Right-handed alpha
Helix 66	AH3	A	1520	1525	Right-handed 310
Helix 67	AH4	A	1529	1547	Right-handed alpha
Helix 68	AH5	A	1609	1628	Right-handed alpha
Helix 69	AH6	A	1629	1651	Right-handed alpha
Helix 70	AH7	A	1655	1662	Right-handed alpha
Helix 71	AH8	A	1701	1721	Right-handed alpha
Helix 72	AH9	C	189	210	Right-handed alpha
Helix 73	AI1	C	221	230	Right-handed 310
Helix 74	AI2	C	231	243	Right-handed alpha
Helix 75	AI3	C	249	260	Right-handed alpha
Helix 76	AI4	C	297	311	Right-handed alpha
Helix 77	AI5	D	10	20	Right-handed alpha
Helix 78	AI6	D	32	45	Right-handed alpha
Helix 79	AI7	D	46	50	Right-handed 310
Helix 80	AI8	D	52	56	Right-handed 310
Helix 81	AI9	D	66	81	Right-handed alpha
Helix 82	AJ1	D	98	109	Right-handed alpha
Helix 83	AJ2	D	116	125	Right-handed alpha
Helix 84	AJ3	D	129	131	Right-handed 310
Helix 85	AJ4	D	140	144	Right-handed 310
Helix 86	AJ5	D	148	160	Right-handed alpha
Helix 87	AJ6	D	161	165	Right-handed 310
Helix 88	AJ7	D	183	195	Right-handed alpha
Helix 89	AJ8	D	204	212	Right-handed alpha
Helix 90	AJ9	D	232	250	Right-handed alpha
Helix 91	AK1	D	271	292	Right-handed alpha
Helix 92	AK2	D	292	314	Right-handed alpha
Helix 93	AK3	D	316	343	Right-handed alpha
Helix 94	AK4	D	344	348	Right-handed 310
Helix 95	AK5	D	350	362	Right-handed alpha
Helix 96	AK6	D	364	378	Right-handed alpha
Helix 97	AK7	D	382	386	Right-handed 310
Helix 98	AK8	D	394	412	Right-handed alpha
Helix 99	AK9	D	414	419	Right-handed alpha
Helix 100	AL1	D	445	452	Right-handed alpha
Helix 101	AL2	D	484	494	Right-handed alpha
Helix 102	AL3	D	510	535	Right-handed alpha
Helix 103	AL4	D	543	552	Right-handed alpha
Helix 104	AL5	D	567	569	Right-handed 310
Helix 105	AL6	D	570	582	Right-handed alpha
Helix 106	AL7	D	598	607	Right-handed alpha
Helix 107	AL8	D	608	611	Right-handed 310
Helix 108	AL9	D	637	656	Right-handed alpha
Helix 109	AM1	D	667	680	Right-handed alpha
Helix 110	AM2	D	681	687	Right-handed 310
Helix 111	AM3	D	693	697	Right-handed 310
Helix 112	AM4	D	741	748	Right-handed alpha
Helix 113	AM5	D	792	810	Right-handed alpha
Helix 114	AM6	D	845	852	Right-handed alpha
Helix 115	AM7	D	862	866	Right-handed 310
Helix 116	AM8	D	873	878	Right-handed alpha
Helix 117	AM9	D	918	930	Right-handed alpha
Helix 118	AN1	D	960	965	Right-handed alpha
Helix 119	AN2	D	972	976	Right-handed 310
Helix 120	AN3	D	982	1017	Right-handed alpha
Helix 121	AN4	D	1018	1025	Right-handed 310
Helix 122	AN5	D	1174	1182	Right-handed alpha
Helix 123	AN6	D	1183	1186	Right-handed 310
Helix 124	AN7	D	1190	1199	Right-handed alpha
Helix 125	AN8	D	1209	1232	Right-handed alpha
Helix 126	AN9	D	1236	1248	Right-handed alpha
Helix 127	AO1	D	1249	1261	Right-handed alpha
Helix 128	AO2	D	1262	1266	Right-handed 310
Helix 129	AO3	D	1272	1277	Right-handed alpha
Helix 130	AO4	D	1285	1295	Right-handed alpha
Helix 131	AO5	D	1297	1302	Right-handed 310
Helix 132	AO6	D	1303	1308	Right-handed alpha
Helix 133	AO7	D	1313	1319	Right-handed alpha
Helix 134	AO8	D	1324	1337	Right-handed alpha
Helix 135	AO9	D	1338	1341	Right-handed 310
Helix 136	AP1	D	1348	1351	Right-handed 310
Helix 137	AP2	D	1352	1357	Right-handed alpha
Helix 138	AP3	D	1362	1387	Right-handed alpha
Helix 139	AP4	D	1387	1393	Right-handed alpha
Helix 140	AP5	D	1403	1407	Right-handed 310
Helix 141	AP6	D	1422	1428	Right-handed alpha
Helix 142	AP7	D	1432	1441	Right-handed alpha
Helix 143	AP8	D	1446	1455	Right-handed alpha
Helix 144	AP9	D	1468	1491	Right-handed alpha
Helix 145	AQ1	D	1495	1508	Right-handed alpha
Helix 146	AQ2	D	1508	1519	Right-handed alpha
Helix 147	AQ3	D	1521	1525	Right-handed 310
Helix 148	AQ4	D	1529	1546	Right-handed alpha
Helix 149	AQ5	D	1609	1628	Right-handed alpha
Helix 150	AQ6	D	1629	1651	Right-handed alpha
Helix 151	AQ7	D	1655	1663	Right-handed alpha
Helix 152	AQ8	D	1701	1721	Right-handed alpha
Helix 153	AQ9	E	189	210	Right-handed alpha
Helix 154	AR1	E	222	230	Right-handed 310
Helix 155	AR2	E	231	243	Right-handed alpha
Helix 156	AR3	E	249	261	Right-handed alpha
Helix 157	AR4	E	295	310	Right-handed alpha

There are 26 sheets in PDB entry 8HF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	111	115	parallel
Strand 3	A	59	64	parallel
Strand 4	A	133	138	parallel
Strand 5	A	167	172	parallel
Strand 6	A	24	27	parallel
Strand 7	A	198	200	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	388	391	parallel
Strand 3	A	475	478	parallel
Strand 4	A	501	507	parallel
Strand 5	A	221	225	parallel
Strand 6	B	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	268	269	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	565	566	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	616	619	anti-parallel
Strand 3	A	630	631	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	706	first strand
Strand 2	A	1358	1362	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	771	first strand
Strand 2	A	776	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	786	789	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	771	first strand
Strand 2	A	776	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	753	758	anti-parallel
Strand 5	A	830	836	anti-parallel
Strand 6	A	842	844	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	820	first strand
Strand 2	A	1282	1283	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	969	971	first strand
Strand 2	A	939	944	anti-parallel
Strand 3	A	893	899	anti-parallel
Strand 4	A	880	884	anti-parallel
Strand 5	A	976	982	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1554	1558	first strand
Strand 2	A	1602	1605	anti-parallel
Strand 3	A	1691	1699	parallel
Strand 4	A	1679	1688	anti-parallel
Strand 5	A	1669	1670	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1554	1558	first strand
Strand 2	A	1602	1605	anti-parallel
Strand 3	A	1691	1699	parallel
Strand 4	A	1679	1688	anti-parallel
Strand 5	A	1674	1676	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	278	282	anti-parallel
Strand 3	C	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	111	115	parallel
Strand 3	D	59	64	parallel
Strand 4	D	133	138	parallel
Strand 5	D	167	172	parallel
Strand 6	D	24	27	parallel
Strand 7	D	198	200	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	225	first strand
Strand 2	D	501	507	parallel
Strand 3	D	475	478	parallel
Strand 4	D	388	391	parallel
Strand 5	D	457	460	parallel
Strand 6	D	421	423	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	268	269	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	559	first strand
Strand 2	D	565	566	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	593	596	first strand
Strand 2	D	616	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	703	706	first strand
Strand 2	D	1358	1361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	768	771	first strand
Strand 2	D	776	781	anti-parallel
Strand 3	D	723	733	anti-parallel
Strand 4	D	786	789	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	768	771	first strand
Strand 2	D	776	781	anti-parallel
Strand 3	D	723	733	anti-parallel
Strand 4	D	753	758	anti-parallel
Strand 5	D	830	836	anti-parallel
Strand 6	D	842	844	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	819	820	first strand
Strand 2	D	1282	1283	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	970	971	first strand
Strand 2	D	939	944	anti-parallel
Strand 3	D	892	899	anti-parallel
Strand 4	D	881	883	anti-parallel
Strand 5	D	977	979	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1554	1558	first strand
Strand 2	D	1602	1605	anti-parallel
Strand 3	D	1692	1699	parallel
Strand 4	D	1679	1687	anti-parallel
Strand 5	D	1669	1670	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1554	1558	first strand
Strand 2	D	1602	1605	anti-parallel
Strand 3	D	1692	1699	parallel
Strand 4	D	1679	1687	anti-parallel
Strand 5	D	1674	1676	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	270	first strand
Strand 2	E	278	282	anti-parallel
Strand 3	E	290	294	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HF0