Analysis of interatomic Contacts of Structural Units in PDB entry:
8HF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HF4 entry

There are 2 chains in PDB entry 8HF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 155SER 717
B
 LEU 155SER 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8HF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 164Right-handed alpha
Helix 2
AA2
A
167 195Right-handed alpha
Helix 3
AA3
A
202 250Right-handed alpha
Helix 4
AA4
A
253 260Right-handed alpha
Helix 5
AA5
A
261 276Right-handed alpha
Helix 6
AA6
A
277 279Right-handed 310
Helix 7
AA7
A
280 288Right-handed alpha
Helix 8
AA8
A
288 304Right-handed alpha
Helix 9
AA9
A
304 312Right-handed alpha
Helix 10
AB1
A
313 325Right-handed alpha
Helix 11
AB2
A
325 353Right-handed alpha
Helix 12
AB3
A
353 361Right-handed alpha
Helix 13
AB4
A
362 416Right-handed alpha
Helix 14
AB5
A
420 459Right-handed alpha
Helix 15
AB6
A
460 464Right-handed 310
Helix 16
AB7
A
522 531Right-handed alpha
Helix 17
AB8
A
552 559Right-handed alpha
Helix 18
AB9
A
573 580Right-handed alpha
Helix 19
AC1
A
588 598Right-handed alpha
Helix 20
AC2
A
623 638Right-handed alpha
Helix 21
AC3
A
653 666Right-handed alpha
Helix 22
AC4
A
677 683Right-handed alpha
Helix 23
AC5
A
700 706Right-handed alpha
Helix 24
AC6
A
709 717Right-handed alpha
Helix 25
AC7
B
157 163Right-handed alpha
Helix 26
AC8
B
165 195Right-handed alpha
Helix 27
AC9
B
195 200Right-handed alpha
Helix 28
AD1
B
203 251Right-handed alpha
Helix 29
AD2
B
253 260Right-handed alpha
Helix 30
AD3
B
261 276Right-handed alpha
Helix 31
AD4
B
278 304Right-handed alpha
Helix 32
AD5
B
304 312Right-handed alpha
Helix 33
AD6
B
313 325Right-handed alpha
Helix 34
AD7
B
325 353Right-handed alpha
Helix 35
AD8
B
353 360Right-handed alpha
Helix 36
AD9
B
362 417Right-handed alpha
Helix 37
AE1
B
420 459Right-handed alpha
Helix 38
AE2
B
460 464Right-handed 310
Helix 39
AE3
B
522 531Right-handed alpha
Helix 40
AE4
B
549 551Right-handed 310
Helix 41
AE5
B
552 559Right-handed alpha
Helix 42
AE6
B
573 579Right-handed alpha
Helix 43
AE7
B
588 598Right-handed alpha
Helix 44
AE8
B
602 607Right-handed alpha
Helix 45
AE9
B
623 638Right-handed alpha
Helix 46
AF1
B
653 666Right-handed alpha
Helix 47
AF2
B
678 684Right-handed alpha
Helix 48
AF3
B
700 708Right-handed alpha
Helix 49
AF4
B
709 717Right-handed alpha
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There are 4 sheets in PDB entry 8HF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
538 543anti-parallel
Strand 4
A
546 547anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
642 646parallel
Strand 3
A
670 674parallel
Strand 4
A
512 516parallel
Strand 5
A
686 690parallel
Strand 6
A
695 699anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 505first strand
Strand 2
B
485 490anti-parallel
Strand 3
B
538 543anti-parallel
Strand 4
B
546 547anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 563first strand
Strand 2
B
642 645parallel
Strand 3
B
670 674parallel
Strand 4
B
512 516parallel
Strand 5
B
687 690parallel
Strand 6
B
695 699anti-parallel
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