Analysis of interatomic Contacts of Structural Units in PDB entry:
8HF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HF5 entry

There are 2 chains in PDB entry 8HF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 155SER 717
B
 LEU 155SER 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8HF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 164Right-handed alpha
Helix 2
AA2
A
168 195Right-handed alpha
Helix 3
AA3
A
201 250Right-handed alpha
Helix 4
AA4
A
262 271Right-handed alpha
Helix 5
AA5
A
272 289Right-handed alpha
Helix 6
AA6
A
290 302Right-handed alpha
Helix 7
AA7
A
305 312Right-handed alpha
Helix 8
AA8
A
313 323Right-handed alpha
Helix 9
AA9
A
327 352Right-handed alpha
Helix 10
AB1
A
353 361Right-handed alpha
Helix 11
AB2
A
362 417Right-handed alpha
Helix 12
AB3
A
420 443Right-handed alpha
Helix 13
AB4
A
444 464Right-handed alpha
Helix 14
AB5
A
522 531Right-handed alpha
Helix 15
AB6
A
553 559Right-handed alpha
Helix 16
AB7
A
573 579Right-handed alpha
Helix 17
AB8
A
588 598Right-handed alpha
Helix 18
AB9
A
623 638Right-handed alpha
Helix 19
AC1
A
653 666Right-handed alpha
Helix 20
AC2
A
678 683Right-handed alpha
Helix 21
AC3
A
700 706Right-handed alpha
Helix 22
AC4
A
709 717Right-handed alpha
Helix 23
AC5
B
157 162Right-handed alpha
Helix 24
AC6
B
168 194Right-handed alpha
Helix 25
AC7
B
195 196Right-handed 310
Helix 26
AC8
B
197 199Right-handed 310
Helix 27
AC9
B
200 250Right-handed alpha
Helix 28
AD1
B
261 274Right-handed alpha
Helix 29
AD2
B
275 277Right-handed 310
Helix 30
AD3
B
278 304Right-handed alpha
Helix 31
AD4
B
305 312Right-handed alpha
Helix 32
AD5
B
314 325Right-handed alpha
Helix 33
AD6
B
327 353Right-handed alpha
Helix 34
AD7
B
353 360Right-handed alpha
Helix 35
AD8
B
364 387Right-handed alpha
Helix 36
AD9
B
388 416Right-handed alpha
Helix 37
AE1
B
420 431Right-handed alpha
Helix 38
AE2
B
431 443Right-handed alpha
Helix 39
AE3
B
444 463Right-handed alpha
Helix 40
AE4
B
522 529Right-handed alpha
Helix 41
AE5
B
552 559Right-handed alpha
Helix 42
AE6
B
573 579Right-handed alpha
Helix 43
AE7
B
587 598Right-handed alpha
Helix 44
AE8
B
600 605Right-handed alpha
Helix 45
AE9
B
623 638Right-handed alpha
Helix 46
AF1
B
653 666Right-handed alpha
Helix 47
AF2
B
677 683Right-handed alpha
Helix 48
AF3
B
700 708Right-handed alpha
Helix 49
AF4
B
709 717Right-handed alpha
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There are 4 sheets in PDB entry 8HF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
538 543anti-parallel
Strand 4
A
546 547anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
642 646parallel
Strand 3
A
670 674parallel
Strand 4
A
512 517parallel
Strand 5
A
686 690parallel
Strand 6
A
695 699anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 506first strand
Strand 2
B
485 491anti-parallel
Strand 3
B
538 543anti-parallel
Strand 4
B
546 547anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 562first strand
Strand 2
B
642 645parallel
Strand 3
B
670 674parallel
Strand 4
B
512 516parallel
Strand 5
B
686 690parallel
Strand 6
B
695 699anti-parallel
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