Analysis of interatomic Contacts of Structural Units in PDB entry:
8HF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HF7 entry

There are 4 chains in PDB entry 8HF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 155SER 717
B
 LEU 155SER 717
D
 UNK 1UNK 13
C
 UNK 1UNK 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 8HF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 163Right-handed alpha
Helix 2
AA2
A
167 188Right-handed alpha
Helix 3
AA3
A
202 250Right-handed alpha
Helix 4
AA4
A
253 260Right-handed alpha
Helix 5
AA5
A
263 272Right-handed alpha
Helix 6
AA6
A
275 277Right-handed 310
Helix 7
AA7
A
278 304Right-handed alpha
Helix 8
AA8
A
305 312Right-handed alpha
Helix 9
AA9
A
313 325Right-handed alpha
Helix 10
AB1
A
326 353Right-handed alpha
Helix 11
AB2
A
353 361Right-handed alpha
Helix 12
AB3
A
363 416Right-handed alpha
Helix 13
AB4
A
420 444Right-handed alpha
Helix 14
AB5
A
444 459Right-handed alpha
Helix 15
AB6
A
522 527Right-handed alpha
Helix 16
AB7
A
528 532Right-handed 310
Helix 17
AB8
A
553 558Right-handed alpha
Helix 18
AB9
A
573 579Right-handed alpha
Helix 19
AC1
A
587 596Right-handed alpha
Helix 20
AC2
A
623 634Right-handed alpha
Helix 21
AC3
A
653 665Right-handed alpha
Helix 22
AC4
A
678 682Right-handed 310
Helix 23
AC5
A
704 708Right-handed 310
Helix 24
AC6
A
710 717Right-handed alpha
Helix 25
AC7
B
158 163Right-handed alpha
Helix 26
AC8
B
167 183Right-handed alpha
Helix 27
AC9
B
183 188Right-handed alpha
Helix 28
AD1
B
202 250Right-handed alpha
Helix 29
AD2
B
253 260Right-handed alpha
Helix 30
AD3
B
263 272Right-handed alpha
Helix 31
AD4
B
275 277Right-handed 310
Helix 32
AD5
B
278 304Right-handed alpha
Helix 33
AD6
B
305 312Right-handed alpha
Helix 34
AD7
B
313 325Right-handed alpha
Helix 35
AD8
B
326 353Right-handed alpha
Helix 36
AD9
B
353 361Right-handed alpha
Helix 37
AE1
B
363 416Right-handed alpha
Helix 38
AE2
B
420 444Right-handed alpha
Helix 39
AE3
B
444 459Right-handed alpha
Helix 40
AE4
B
459 464Right-handed alpha
Helix 41
AE5
B
522 527Right-handed alpha
Helix 42
AE6
B
528 532Right-handed 310
Helix 43
AE7
B
553 558Right-handed alpha
Helix 44
AE8
B
574 579Right-handed alpha
Helix 45
AE9
B
587 596Right-handed alpha
Helix 46
AF1
B
623 634Right-handed alpha
Helix 47
AF2
B
653 665Right-handed alpha
Helix 48
AF3
B
678 682Right-handed 310
Helix 49
AF4
B
704 708Right-handed 310
Helix 50
AF5
B
710 717Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8HF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
538 543anti-parallel
Strand 4
A
546 547anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 674first strand
Strand 2
A
512 515parallel
Strand 3
A
686 691parallel
Strand 4
A
694 699anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
642 644parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 503first strand
Strand 2
B
485 491anti-parallel
Strand 3
B
538 543anti-parallel
Strand 4
B
546 547anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
671 674first strand
Strand 2
B
512 515parallel
Strand 3
B
686 691parallel
Strand 4
B
694 699anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 562first strand
Strand 2
B
642 644parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 573first strand
Strand 2
B
615 616anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il