Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HFA entry

There are 5 chains in PDB entry 8HFA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 35	ARG 246
B	LEU 35	ARG 246
C	LEU 35	ARG 246
D	LEU 35	ARG 246
E	LEU 35	ARG 246

There are 65 helices in PDB entry 8HFA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	72	Right-handed alpha
Helix 2	AA2	A	87	90	Right-handed 310
Helix 3	AA3	A	91	101	Right-handed alpha
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	119	138	Right-handed alpha
Helix 6	AA6	A	147	151	Right-handed 310
Helix 7	AA7	A	153	163	Right-handed alpha
Helix 8	AA8	A	175	179	Right-handed 310
Helix 9	AA9	A	180	192	Right-handed alpha
Helix 10	AB1	A	204	210	Right-handed alpha
Helix 11	AB2	A	210	223	Right-handed alpha
Helix 12	AB3	A	228	233	Right-handed alpha
Helix 13	AB4	A	236	239	Right-handed 310
Helix 14	AB5	B	61	72	Right-handed alpha
Helix 15	AB6	B	87	90	Right-handed 310
Helix 16	AB7	B	91	101	Right-handed alpha
Helix 17	AB8	B	114	118	Right-handed 310
Helix 18	AB9	B	119	139	Right-handed alpha
Helix 19	AC1	B	147	151	Right-handed 310
Helix 20	AC2	B	153	164	Right-handed alpha
Helix 21	AC3	B	175	179	Right-handed 310
Helix 22	AC4	B	180	192	Right-handed alpha
Helix 23	AC5	B	204	210	Right-handed alpha
Helix 24	AC6	B	210	222	Right-handed alpha
Helix 25	AC7	B	228	233	Right-handed alpha
Helix 26	AC8	B	236	239	Right-handed 310
Helix 27	AC9	C	61	72	Right-handed alpha
Helix 28	AD1	C	87	90	Right-handed 310
Helix 29	AD2	C	91	101	Right-handed alpha
Helix 30	AD3	C	114	118	Right-handed 310
Helix 31	AD4	C	119	139	Right-handed alpha
Helix 32	AD5	C	147	151	Right-handed 310
Helix 33	AD6	C	153	164	Right-handed alpha
Helix 34	AD7	C	175	179	Right-handed 310
Helix 35	AD8	C	180	192	Right-handed alpha
Helix 36	AD9	C	204	210	Right-handed alpha
Helix 37	AE1	C	210	223	Right-handed alpha
Helix 38	AE2	C	228	233	Right-handed alpha
Helix 39	AE3	C	236	239	Right-handed 310
Helix 40	AE4	D	61	72	Right-handed alpha
Helix 41	AE5	D	87	90	Right-handed 310
Helix 42	AE6	D	91	101	Right-handed alpha
Helix 43	AE7	D	114	118	Right-handed 310
Helix 44	AE8	D	119	139	Right-handed alpha
Helix 45	AE9	D	147	151	Right-handed 310
Helix 46	AF1	D	153	164	Right-handed alpha
Helix 47	AF2	D	175	179	Right-handed 310
Helix 48	AF3	D	180	192	Right-handed alpha
Helix 49	AF4	D	204	210	Right-handed alpha
Helix 50	AF5	D	210	223	Right-handed alpha
Helix 51	AF6	D	228	233	Right-handed alpha
Helix 52	AF7	D	236	239	Right-handed 310
Helix 53	AF8	E	61	72	Right-handed alpha
Helix 54	AF9	E	87	90	Right-handed 310
Helix 55	AG1	E	91	101	Right-handed alpha
Helix 56	AG2	E	114	118	Right-handed 310
Helix 57	AG3	E	119	139	Right-handed alpha
Helix 58	AG4	E	147	151	Right-handed 310
Helix 59	AG5	E	153	164	Right-handed alpha
Helix 60	AG6	E	175	179	Right-handed 310
Helix 61	AG7	E	180	192	Right-handed alpha
Helix 62	AG8	E	204	210	Right-handed alpha
Helix 63	AG9	E	210	222	Right-handed alpha
Helix 64	AH1	E	228	233	Right-handed alpha
Helix 65	AH2	E	236	239	Right-handed 310

There are 20 sheets in PDB entry 8HFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	166	168	parallel
Strand 3	A	144	145	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	77	80	parallel
Strand 3	A	49	57	parallel
Strand 4	A	197	200	parallel
Strand 5	A	172	173	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	77	80	parallel
Strand 3	A	49	57	parallel
Strand 4	A	225	226	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	241	242	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	166	168	parallel
Strand 3	B	144	145	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	77	80	parallel
Strand 3	B	49	55	parallel
Strand 4	B	197	200	parallel
Strand 5	B	172	173	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	77	80	parallel
Strand 3	B	49	55	parallel
Strand 4	B	225	226	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	241	242	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	166	168	parallel
Strand 3	C	144	145	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	77	80	parallel
Strand 3	C	49	55	parallel
Strand 4	C	197	200	parallel
Strand 5	C	172	173	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	77	80	parallel
Strand 3	C	49	55	parallel
Strand 4	C	225	226	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	241	242	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	166	168	parallel
Strand 3	D	144	145	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	77	80	parallel
Strand 3	D	49	55	parallel
Strand 4	D	197	200	parallel
Strand 5	D	172	173	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	77	80	parallel
Strand 3	D	49	55	parallel
Strand 4	D	225	226	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	241	242	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	166	168	parallel
Strand 3	E	144	145	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	107	first strand
Strand 2	E	77	80	parallel
Strand 3	E	49	55	parallel
Strand 4	E	197	200	parallel
Strand 5	E	172	173	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	107	first strand
Strand 2	E	77	80	parallel
Strand 3	E	49	55	parallel
Strand 4	E	225	226	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	241	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HFA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFA