Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HFC entry

There are 2 chains in PDB entry 8HFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 75ALA 350
B
 GLU 16LYS 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8HFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 94Right-handed alpha
Helix 2
AA2
A
106 129Right-handed alpha
Helix 3
AA3
A
214 243Right-handed alpha
Helix 4
AA4
A
246 249Right-handed 310
Helix 5
AA5
A
250 264Right-handed alpha
Helix 6
AA6
A
264 279Right-handed alpha
Helix 7
AA7
A
283 291Right-handed alpha
Helix 8
AA8
A
313 323Right-handed alpha
Helix 9
AA9
B
45 49Right-handed 310
Helix 10
AB1
B
65 69Right-handed alpha
Helix 11
AB2
B
130 135Right-handed 310
Helix 12
AB3
B
137 157Right-handed alpha
Helix 13
AB4
B
161 174Right-handed alpha
Helix 14
AB5
B
188 190Right-handed 310
Helix 15
AB6
B
191 206Right-handed alpha
Helix 16
AB7
B
209 215Right-handed alpha
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There are 7 sheets in PDB entry 8HFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
170 172anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
194 196anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
50 51anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
115 116anti-parallel
Strand 3
B
123 124anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
229 234anti-parallel
Strand 3
B
217 218anti-parallel
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