Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HFD entry

There are 8 chains in PDB entry 8HFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PHE 145
A	CYS 147	GLN 453
B	SER 2	PHE 145
B	CYS 147	GLN 453
C	SER 2	PHE 145
C	CYS 147	GLN 453
D	SER 2	PHE 145
D	CYS 147	GLN 453

There are 87 helices in PDB entry 8HFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	68	Right-handed alpha
Helix 2	AA2	A	69	71	Right-handed 310
Helix 3	AA3	A	72	83	Right-handed alpha
Helix 4	AA4	A	101	113	Right-handed alpha
Helix 5	AA5	A	130	133	Right-handed 310
Helix 6	AA6	A	134	141	Right-handed alpha
Helix 7	AA7	A	165	180	Right-handed alpha
Helix 8	AA8	A	189	203	Right-handed alpha
Helix 9	AA9	A	207	214	Right-handed alpha
Helix 10	AB1	A	216	235	Right-handed alpha
Helix 11	AB2	A	245	258	Right-handed alpha
Helix 12	AB3	A	268	273	Right-handed alpha
Helix 13	AB4	A	274	282	Right-handed alpha
Helix 14	AB5	A	283	286	Right-handed 310
Helix 15	AB6	A	293	306	Right-handed alpha
Helix 16	AB7	A	320	325	Right-handed 310
Helix 17	AB8	A	337	340	Right-handed 310
Helix 18	AB9	A	341	350	Right-handed alpha
Helix 19	AC1	A	356	365	Right-handed alpha
Helix 20	AC2	A	365	372	Right-handed alpha
Helix 21	AC3	A	400	404	Right-handed 310
Helix 22	AC4	A	449	453	Right-handed 310
Helix 23	AC5	B	63	68	Right-handed alpha
Helix 24	AC6	B	69	71	Right-handed 310
Helix 25	AC7	B	72	83	Right-handed alpha
Helix 26	AC8	B	101	112	Right-handed alpha
Helix 27	AC9	B	130	132	Right-handed 310
Helix 28	AD1	B	133	141	Right-handed alpha
Helix 29	AD2	B	165	180	Right-handed alpha
Helix 30	AD3	B	189	203	Right-handed alpha
Helix 31	AD4	B	207	214	Right-handed alpha
Helix 32	AD5	B	216	235	Right-handed alpha
Helix 33	AD6	B	245	258	Right-handed alpha
Helix 34	AD7	B	268	273	Right-handed alpha
Helix 35	AD8	B	274	282	Right-handed alpha
Helix 36	AD9	B	283	286	Right-handed 310
Helix 37	AE1	B	293	306	Right-handed alpha
Helix 38	AE2	B	320	325	Right-handed 310
Helix 39	AE3	B	337	340	Right-handed 310
Helix 40	AE4	B	341	350	Right-handed alpha
Helix 41	AE5	B	356	365	Right-handed alpha
Helix 42	AE6	B	365	372	Right-handed alpha
Helix 43	AE7	B	400	404	Right-handed 310
Helix 44	AE8	B	449	453	Right-handed 310
Helix 45	AE9	C	63	68	Right-handed alpha
Helix 46	AF1	C	69	71	Right-handed 310
Helix 47	AF2	C	72	83	Right-handed alpha
Helix 48	AF3	C	101	113	Right-handed alpha
Helix 49	AF4	C	130	133	Right-handed 310
Helix 50	AF5	C	134	141	Right-handed alpha
Helix 51	AF6	C	165	180	Right-handed alpha
Helix 52	AF7	C	189	203	Right-handed alpha
Helix 53	AF8	C	207	215	Right-handed alpha
Helix 54	AF9	C	216	235	Right-handed alpha
Helix 55	AG1	C	245	258	Right-handed alpha
Helix 56	AG2	C	268	273	Right-handed alpha
Helix 57	AG3	C	274	282	Right-handed alpha
Helix 58	AG4	C	283	286	Right-handed 310
Helix 59	AG5	C	293	306	Right-handed alpha
Helix 60	AG6	C	320	325	Right-handed 310
Helix 61	AG7	C	337	340	Right-handed 310
Helix 62	AG8	C	341	350	Right-handed alpha
Helix 63	AG9	C	356	365	Right-handed alpha
Helix 64	AH1	C	365	372	Right-handed alpha
Helix 65	AH2	C	400	404	Right-handed 310
Helix 66	AH3	C	449	453	Right-handed 310
Helix 67	AH4	D	63	68	Right-handed alpha
Helix 68	AH5	D	71	83	Right-handed alpha
Helix 69	AH6	D	101	113	Right-handed alpha
Helix 70	AH7	D	130	132	Right-handed 310
Helix 71	AH8	D	133	141	Right-handed alpha
Helix 72	AH9	D	165	180	Right-handed alpha
Helix 73	AI1	D	189	203	Right-handed alpha
Helix 74	AI2	D	207	214	Right-handed alpha
Helix 75	AI3	D	216	235	Right-handed alpha
Helix 76	AI4	D	245	258	Right-handed alpha
Helix 77	AI5	D	268	273	Right-handed alpha
Helix 78	AI6	D	274	282	Right-handed alpha
Helix 79	AI7	D	283	286	Right-handed 310
Helix 80	AI8	D	293	306	Right-handed alpha
Helix 81	AI9	D	320	325	Right-handed 310
Helix 82	AJ1	D	337	339	Right-handed 310
Helix 83	AJ2	D	340	350	Right-handed alpha
Helix 84	AJ3	D	356	365	Right-handed alpha
Helix 85	AJ4	D	365	372	Right-handed alpha
Helix 86	AJ5	D	400	404	Right-handed 310
Helix 87	AJ6	D	449	453	Right-handed 310

There are 18 sheets in PDB entry 8HFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	5	8	parallel
Strand 3	A	22	26	anti-parallel
Strand 4	A	29	34	anti-parallel
Strand 5	C	29	34	anti-parallel
Strand 6	C	18	26	anti-parallel
Strand 7	C	3	13	anti-parallel
Strand 8	C	40	45	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	5	8	parallel
Strand 3	A	22	26	anti-parallel
Strand 4	A	29	34	anti-parallel
Strand 5	C	29	34	anti-parallel
Strand 6	C	18	26	anti-parallel
Strand 7	C	3	13	anti-parallel
Strand 8	C	50	53	parallel
Strand 9	C	388	392	anti-parallel
Strand 10	C	421	427	anti-parallel
Strand 11	C	430	434	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	11	13	anti-parallel
Strand 3	A	50	53	parallel
Strand 4	A	388	392	anti-parallel
Strand 5	A	421	427	anti-parallel
Strand 6	A	430	434	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	85	90	parallel
Strand 3	A	119	125	parallel
Strand 4	A	144	148	parallel
Strand 5	A	183	186	parallel
Strand 6	A	238	240	parallel
Strand 7	A	262	266	parallel
Strand 8	A	311	312	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	85	90	parallel
Strand 3	A	119	125	parallel
Strand 4	A	447	448	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	417	418	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	3	13	parallel
Strand 3	B	50	53	parallel
Strand 4	B	388	392	anti-parallel
Strand 5	B	421	427	anti-parallel
Strand 6	B	430	434	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	3	13	parallel
Strand 3	B	18	26	anti-parallel
Strand 4	B	29	34	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	22	26	anti-parallel
Strand 7	D	5	8	anti-parallel
Strand 8	D	43	45	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	85	90	parallel
Strand 3	B	119	125	parallel
Strand 4	B	144	148	parallel
Strand 5	B	183	186	parallel
Strand 6	B	238	240	parallel
Strand 7	B	262	266	parallel
Strand 8	B	311	312	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	85	90	parallel
Strand 3	B	119	125	parallel
Strand 4	B	447	448	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	417	418	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	85	90	parallel
Strand 3	C	119	125	parallel
Strand 4	C	144	148	parallel
Strand 5	C	183	186	parallel
Strand 6	C	238	240	parallel
Strand 7	C	262	266	parallel
Strand 8	C	311	312	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	85	90	parallel
Strand 3	C	119	125	parallel
Strand 4	C	447	448	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	417	418	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	11	13	anti-parallel
Strand 3	D	50	53	parallel
Strand 4	D	388	392	anti-parallel
Strand 5	D	421	427	anti-parallel
Strand 6	D	430	434	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	85	90	parallel
Strand 3	D	119	125	parallel
Strand 4	D	144	148	parallel
Strand 5	D	183	186	parallel
Strand 6	D	238	240	parallel
Strand 7	D	262	266	parallel
Strand 8	D	311	312	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	85	90	parallel
Strand 3	D	119	125	parallel
Strand 4	D	447	448	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	398	first strand
Strand 2	D	417	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFD