Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HFH entry

There is 1 chain in PDB entry 8HFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8HFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
67 76Right-handed alpha
Helix 4
AA4
A
91 97Right-handed alpha
Helix 5
AA5
A
104 118Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
174 189Right-handed alpha
Helix 8
AA8
A
241 246Right-handed alpha
Helix 9
AA9
A
248 275Right-handed alpha
Helix 10
AB1
A
282 285Right-handed 310
Helix 11
AB2
A
286 292Right-handed alpha
Helix 12
AB3
A
293 296Right-handed 310
Helix 13
AB4
A
313 327Right-handed alpha
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There are 6 sheets in PDB entry 8HFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
7 13parallel
Strand 3
A
301 308parallel
Strand 4
A
80 85parallel
Strand 5
A
226 235parallel
Strand 6
A
204 215anti-parallel
Strand 7
A
123 135anti-parallel
Strand 8
A
170 172anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
123 135anti-parallel
Strand 3
A
204 215anti-parallel
Strand 4
A
226 235anti-parallel
Strand 5
A
337 338anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
46 48anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
162 164anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
200 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il