Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HFJ entry

There are 4 chains in PDB entry 8HFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 10ALA 268
B
 PRO 11ALA 268
C
 HIS 9ALA 268
D
 LEU 8ALA 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8HFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
77 93Right-handed alpha
Helix 4
AA4
A
109 113Right-handed 310
Helix 5
AA5
A
114 126Right-handed alpha
Helix 6
AA6
A
126 139Right-handed alpha
Helix 7
AA7
A
162 183Right-handed alpha
Helix 8
AA8
A
184 187Right-handed 310
Helix 9
AA9
A
200 208Right-handed alpha
Helix 10
AB1
A
218 227Right-handed alpha
Helix 11
AB2
A
237 249Right-handed alpha
Helix 12
AB3
B
26 39Right-handed alpha
Helix 13
AB4
B
50 64Right-handed alpha
Helix 14
AB5
B
77 93Right-handed alpha
Helix 15
AB6
B
109 113Right-handed 310
Helix 16
AB7
B
114 126Right-handed alpha
Helix 17
AB8
B
126 140Right-handed alpha
Helix 18
AB9
B
162 183Right-handed alpha
Helix 19
AC1
B
200 210Right-handed alpha
Helix 20
AC2
B
218 227Right-handed alpha
Helix 21
AC3
B
237 249Right-handed alpha
Helix 22
AC4
B
250 256Right-handed 310
Helix 23
AC5
C
26 39Right-handed alpha
Helix 24
AC6
C
50 64Right-handed alpha
Helix 25
AC7
C
77 93Right-handed alpha
Helix 26
AC8
C
109 113Right-handed 310
Helix 27
AC9
C
114 126Right-handed alpha
Helix 28
AD1
C
126 140Right-handed alpha
Helix 29
AD2
C
162 184Right-handed alpha
Helix 30
AD3
C
185 187Right-handed 310
Helix 31
AD4
C
200 208Right-handed alpha
Helix 32
AD5
C
218 228Right-handed alpha
Helix 33
AD6
C
237 250Right-handed alpha
Helix 34
AD7
C
251 254Right-handed 310
Helix 35
AD8
D
26 39Right-handed alpha
Helix 36
AD9
D
50 64Right-handed alpha
Helix 37
AE1
D
77 93Right-handed alpha
Helix 38
AE2
D
109 113Right-handed 310
Helix 39
AE3
D
114 126Right-handed alpha
Helix 40
AE4
D
126 140Right-handed alpha
Helix 41
AE5
D
162 183Right-handed alpha
Helix 42
AE6
D
184 187Right-handed 310
Helix 43
AE7
D
200 206Right-handed alpha
Helix 44
AE8
D
219 227Right-handed alpha
Helix 45
AE9
D
237 249Right-handed alpha
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There are 4 sheets in PDB entry 8HFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
42 47parallel
Strand 3
A
18 21parallel
Strand 4
A
95 99parallel
Strand 5
A
140 149parallel
Strand 6
A
189 195parallel
Strand 7
A
260 263parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
42 47parallel
Strand 3
B
18 21parallel
Strand 4
B
97 99parallel
Strand 5
B
145 149parallel
Strand 6
B
189 195parallel
Strand 7
B
260 263parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
42 47parallel
Strand 3
C
18 21parallel
Strand 4
C
97 100parallel
Strand 5
C
145 149parallel
Strand 6
C
189 195parallel
Strand 7
C
260 263parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 72first strand
Strand 2
D
42 47parallel
Strand 3
D
18 21parallel
Strand 4
D
97 100parallel
Strand 5
D
145 149parallel
Strand 6
D
189 195parallel
Strand 7
D
260 263parallel
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