Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HFN entry

There is 1 chain in PDB entry 8HFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8HFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 72Right-handed alpha
Helix 2
AA2
A
86 97Right-handed alpha
Helix 3
AA3
A
99 118Right-handed alpha
Helix 4
AA4
A
132 146Right-handed alpha
Helix 5
AA5
A
177 188Right-handed alpha
Helix 6
AA6
A
226 239Right-handed alpha
Helix 7
AA7
A
251 254Right-handed 310
Helix 8
AA8
A
255 269Right-handed alpha
Helix 9
AA9
A
291 295Right-handed 310
Helix 10
AB1
A
299 306Right-handed alpha
Helix 11
AB2
A
309 319Right-handed alpha
Helix 12
AB3
A
329 348Right-handed alpha
Helix 13
AB4
A
355 368Right-handed alpha
Helix 14
AB5
A
371 390Right-handed alpha
Helix 15
AB6
A
395 409Right-handed alpha
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There are 3 sheets in PDB entry 8HFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
28 31anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
75 82parallel
Strand 3
A
37 42parallel
Strand 4
A
243 249parallel
Strand 5
A
274 280parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
203 208anti-parallel
Strand 4
A
223 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il