Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HFX entry

There are 2 chains in PDB entry 8HFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1144
B	GLN 14	THR 330

There are 94 helices in PDB entry 8HFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	362	368	Right-handed 310
Helix 3	AA3	A	402	407	Right-handed 310
Helix 4	AA4	A	435	440	Right-handed alpha
Helix 5	AA5	A	499	502	Right-handed 310
Helix 6	AA6	A	734	741	Right-handed alpha
Helix 7	AA7	A	743	751	Right-handed alpha
Helix 8	AA8	A	752	754	Right-handed 310
Helix 9	AA9	A	756	780	Right-handed alpha
Helix 10	AB1	A	813	823	Right-handed alpha
Helix 11	AB2	A	846	852	Right-handed alpha
Helix 12	AB3	A	863	881	Right-handed alpha
Helix 13	AB4	A	883	887	Right-handed 310
Helix 14	AB5	A	894	905	Right-handed alpha
Helix 15	AB6	A	910	915	Right-handed alpha
Helix 16	AB7	A	916	938	Right-handed alpha
Helix 17	AB8	A	942	962	Right-handed alpha
Helix 18	AB9	A	963	965	Right-handed 310
Helix 19	AC1	A	973	979	Right-handed alpha
Helix 20	AC2	A	982	1029	Right-handed alpha
Helix 21	AC3	A	1137	1144	Right-handed alpha
Helix 22	AC4	B	291	301	Right-handed alpha
Helix 23	AC5	B	335	340	Right-handed alpha
Helix 24	AC6	B	362	367	Right-handed alpha
Helix 25	AC7	B	383	387	Right-handed 310
Helix 26	AC8	B	401	405	Right-handed alpha
Helix 27	AC9	B	413	419	Right-handed alpha
Helix 28	AD1	B	613	617	Right-handed 310
Helix 29	AD2	B	734	740	Right-handed alpha
Helix 30	AD3	B	743	751	Right-handed alpha
Helix 31	AD4	B	752	754	Right-handed 310
Helix 32	AD5	B	756	780	Right-handed alpha
Helix 33	AD6	B	813	823	Right-handed alpha
Helix 34	AD7	B	846	852	Right-handed alpha
Helix 35	AD8	B	863	881	Right-handed alpha
Helix 36	AD9	B	883	887	Right-handed 310
Helix 37	AE1	B	894	906	Right-handed alpha
Helix 38	AE2	B	910	915	Right-handed alpha
Helix 39	AE3	B	916	938	Right-handed alpha
Helix 40	AE4	B	942	962	Right-handed alpha
Helix 41	AE5	B	963	965	Right-handed 310
Helix 42	AE6	B	973	981	Right-handed alpha
Helix 43	AE7	B	982	1029	Right-handed alpha
Helix 44	AE8	B	1137	1144	Right-handed alpha
Helix 45	AE9	C	291	301	Right-handed alpha
Helix 46	AF1	C	334	340	Right-handed alpha
Helix 47	AF2	C	403	407	Right-handed 310
Helix 48	AF3	C	413	419	Right-handed alpha
Helix 49	AF4	C	499	502	Right-handed 310
Helix 50	AF5	C	734	740	Right-handed alpha
Helix 51	AF6	C	743	751	Right-handed alpha
Helix 52	AF7	C	755	780	Right-handed alpha
Helix 53	AF8	C	813	823	Right-handed alpha
Helix 54	AF9	C	846	852	Right-handed alpha
Helix 55	AG1	C	863	881	Right-handed alpha
Helix 56	AG2	C	883	887	Right-handed 310
Helix 57	AG3	C	894	907	Right-handed alpha
Helix 58	AG4	C	909	916	Right-handed alpha
Helix 59	AG5	C	916	938	Right-handed alpha
Helix 60	AG6	C	939	941	Right-handed 310
Helix 61	AG7	C	942	962	Right-handed alpha
Helix 62	AG8	C	973	981	Right-handed alpha
Helix 63	AG9	C	982	1029	Right-handed alpha
Helix 64	AH1	C	1137	1143	Right-handed alpha
Helix 65	AH2	E	22	54	Right-handed alpha
Helix 66	AH3	E	56	82	Right-handed alpha
Helix 67	AH4	E	91	102	Right-handed alpha
Helix 68	AH5	E	110	130	Right-handed alpha
Helix 69	AH6	E	147	155	Right-handed alpha
Helix 70	AH7	E	157	194	Right-handed alpha
Helix 71	AH8	E	198	205	Right-handed alpha
Helix 72	AH9	E	206	208	Right-handed 310
Helix 73	AI1	E	220	252	Right-handed alpha
Helix 74	AI2	E	265	268	Right-handed 310
Helix 75	AI3	E	278	282	Right-handed 310
Helix 76	AI4	E	294	299	Right-handed alpha
Helix 77	AI5	E	305	316	Right-handed alpha
Helix 78	AI6	E	317	319	Right-handed 310
Helix 79	AI7	E	365	386	Right-handed alpha
Helix 80	AI8	E	387	388	Right-handed 310
Helix 81	AI9	E	389	393	Right-handed 310
Helix 82	AJ1	E	399	413	Right-handed alpha
Helix 83	AJ2	E	414	422	Right-handed alpha
Helix 84	AJ3	E	432	449	Right-handed alpha
Helix 85	AJ4	E	449	466	Right-handed alpha
Helix 86	AJ5	E	469	473	Right-handed 310
Helix 87	AJ6	E	474	485	Right-handed alpha
Helix 88	AJ7	E	499	502	Right-handed 310
Helix 89	AJ8	E	503	508	Right-handed alpha
Helix 90	AJ9	E	515	533	Right-handed alpha
Helix 91	AK1	E	548	559	Right-handed alpha
Helix 92	AK2	E	565	574	Right-handed alpha
Helix 93	AK3	E	582	588	Right-handed alpha
Helix 94	AK4	E	588	599	Right-handed alpha

There are 42 sheets in PDB entry 8HFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	60	67	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	88	92	anti-parallel
Strand 5	A	183	192	anti-parallel
Strand 6	A	195	204	anti-parallel
Strand 7	A	221	227	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	284	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	119	anti-parallel
Strand 5	A	124	128	anti-parallel
Strand 6	A	164	167	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	640	641	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	536	540	parallel
Strand 3	A	543	551	anti-parallel
Strand 4	A	581	585	anti-parallel
Strand 5	A	570	574	anti-parallel
Strand 6	A	562	564	anti-parallel
Strand 7	B	42	43	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	391	400	anti-parallel
Strand 3	A	504	513	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	521	522	parallel
Strand 3	A	388	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	428	434	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	489	491	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	657	first strand
Strand 2	A	688	694	parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	661	664	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	725	first strand
Strand 2	A	1056	1073	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	733	first strand
Strand 2	A	855	858	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	785	first strand
Strand 2	C	698	699	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1083	1087	anti-parallel
Strand 3	A	1078	1080	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1094	first strand
Strand 2	A	1099	1102	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	183	192	anti-parallel
Strand 6	B	195	203	anti-parallel
Strand 7	B	219	226	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	114	119	anti-parallel
Strand 5	B	124	129	anti-parallel
Strand 6	B	163	167	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	641	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	392	400	anti-parallel
Strand 3	B	504	511	anti-parallel
Strand 4	B	428	434	anti-parallel
Strand 5	B	376	377	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	489	491	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	543	551	anti-parallel
Strand 3	B	581	585	anti-parallel
Strand 4	B	572	574	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	688	693	parallel
Strand 3	B	667	672	anti-parallel
Strand 4	B	661	664	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	701	first strand
Strand 2	C	784	787	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	725	first strand
Strand 2	B	1056	1074	anti-parallel
Strand 3	B	1044	1053	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	725	first strand
Strand 2	B	1056	1074	anti-parallel
Strand 3	B	1091	1094	anti-parallel
Strand 4	B	1099	1102	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1119	first strand
Strand 2	B	1083	1087	anti-parallel
Strand 3	B	1078	1080	anti-parallel
Strand 4	B	1130	1131	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	183	190	anti-parallel
Strand 6	C	197	204	anti-parallel
Strand 7	C	219	225	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	114	119	anti-parallel
Strand 5	C	124	128	anti-parallel
Strand 6	C	163	167	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	640	641	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	392	400	anti-parallel
Strand 3	C	504	511	anti-parallel
Strand 4	C	428	434	anti-parallel
Strand 5	C	373	377	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	489	491	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	485	486	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	540	first strand
Strand 2	C	543	551	anti-parallel
Strand 3	C	581	585	anti-parallel
Strand 4	C	570	574	anti-parallel
Strand 5	C	563	564	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	688	693	parallel
Strand 3	C	667	672	anti-parallel
Strand 4	C	661	664	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1044	1053	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	733	first strand
Strand 2	C	855	857	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1119	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1080	anti-parallel
Strand 4	C	1130	1131	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	263	first strand
Strand 2	E	487	488	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFX