Analysis of interatomic Contacts of Structural Units in PDB entry:
8HFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HFY entry

There are 2 chains in PDB entry 8HFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 333GLY 526
A
 SER 20SER 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8HFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
367 371Right-handed 310
Helix 2
AA2
B
405 409Right-handed 310
Helix 3
AA3
B
438 443Right-handed alpha
Helix 4
AA4
B
502 505Right-handed 310
Helix 5
AA5
A
21 54Right-handed alpha
Helix 6
AA6
A
56 82Right-handed alpha
Helix 7
AA7
A
91 103Right-handed alpha
Helix 8
AA8
A
104 109Right-handed 310
Helix 9
AA9
A
110 130Right-handed alpha
Helix 10
AB1
A
136 139Right-handed 310
Helix 11
AB2
A
146 155Right-handed alpha
Helix 12
AB3
A
157 194Right-handed alpha
Helix 13
AB4
A
198 205Right-handed alpha
Helix 14
AB5
A
206 208Right-handed 310
Helix 15
AB6
A
218 252Right-handed alpha
Helix 16
AB7
A
265 267Right-handed 310
Helix 17
AB8
A
275 277Right-handed 310
Helix 18
AB9
A
278 283Right-handed alpha
Helix 19
AC1
A
293 300Right-handed alpha
Helix 20
AC2
A
303 318Right-handed alpha
Helix 21
AC3
A
324 331Right-handed alpha
Helix 22
AC4
A
365 385Right-handed alpha
Helix 23
AC5
A
386 388Right-handed 310
Helix 24
AC6
A
389 393Right-handed 310
Helix 25
AC7
A
399 412Right-handed alpha
Helix 26
AC8
A
414 421Right-handed alpha
Helix 27
AC9
A
431 448Right-handed alpha
Helix 28
AD1
A
448 465Right-handed alpha
Helix 29
AD2
A
474 484Right-handed alpha
Helix 30
AD3
A
498 502Right-handed 310
Helix 31
AD4
A
503 508Right-handed alpha
Helix 32
AD5
A
516 533Right-handed alpha
Helix 33
AD6
A
547 559Right-handed alpha
Helix 34
AD7
A
565 574Right-handed alpha
Helix 35
AD8
A
581 588Right-handed alpha
Helix 36
AD9
A
588 599Right-handed alpha
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There are 7 sheets in PDB entry 8HFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
524 525anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il