Analysis of interatomic Contacts of Structural Units in PDB entry:
8HG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HG0 entry

There are 2 chains in PDB entry 8HG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20SER 614
B
 THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 8HG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 54Right-handed alpha
Helix 2
AA2
A
56 82Right-handed alpha
Helix 3
AA3
A
91 103Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
110 130Right-handed alpha
Helix 6
AA6
A
146 155Right-handed alpha
Helix 7
AA7
A
157 194Right-handed alpha
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
205 208Right-handed 310
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
225 252Right-handed alpha
Helix 12
AB3
A
265 267Right-handed 310
Helix 13
AB4
A
275 279Right-handed 310
Helix 14
AB5
A
293 298Right-handed alpha
Helix 15
AB6
A
299 302Right-handed 310
Helix 16
AB7
A
303 318Right-handed alpha
Helix 17
AB8
A
324 329Right-handed alpha
Helix 18
AB9
A
365 385Right-handed alpha
Helix 19
AC1
A
389 393Right-handed 310
Helix 20
AC2
A
399 414Right-handed alpha
Helix 21
AC3
A
414 421Right-handed alpha
Helix 22
AC4
A
431 447Right-handed alpha
Helix 23
AC5
A
448 466Right-handed alpha
Helix 24
AC6
A
469 471Right-handed 310
Helix 25
AC7
A
472 484Right-handed alpha
Helix 26
AC8
A
499 502Right-handed 310
Helix 27
AC9
A
503 508Right-handed alpha
Helix 28
AD1
A
513 532Right-handed alpha
Helix 29
AD2
A
547 559Right-handed alpha
Helix 30
AD3
A
565 575Right-handed alpha
Helix 31
AD4
A
581 600Right-handed alpha
Helix 32
AD5
B
337 343Right-handed alpha
Helix 33
AD6
B
365 371Right-handed alpha
Helix 34
AD7
B
416 422Right-handed alpha
Helix 35
AD8
B
438 443Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8HG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
142 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il