Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HGG entry

There are 4 chains in PDB entry 8HGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 88	TYR 222
B	THR 88	TYR 222
C	PRO 13	HIS 1536
D	PRO 13	HIS 1536

There are 54 helices in PDB entry 8HGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	129	Right-handed alpha
Helix 2	AA2	A	138	150	Right-handed alpha
Helix 3	AA3	B	117	129	Right-handed alpha
Helix 4	AA4	B	138	150	Right-handed alpha
Helix 5	AA5	C	149	153	Right-handed 310
Helix 6	AA6	C	184	194	Right-handed alpha
Helix 7	AA7	C	250	253	Right-handed 310
Helix 8	AA8	C	254	264	Right-handed alpha
Helix 9	AA9	C	291	306	Right-handed alpha
Helix 10	AB1	C	322	328	Right-handed alpha
Helix 11	AB2	C	335	339	Right-handed 310
Helix 12	AB3	C	353	358	Right-handed alpha
Helix 13	AB4	C	386	391	Right-handed alpha
Helix 14	AB5	C	400	405	Right-handed alpha
Helix 15	AB6	C	418	426	Right-handed alpha
Helix 16	AB7	C	467	471	Right-handed 310
Helix 17	AB8	C	478	488	Right-handed alpha
Helix 18	AB9	C	492	496	Right-handed 310
Helix 19	AC1	C	568	582	Right-handed alpha
Helix 20	AC2	C	815	821	Right-handed alpha
Helix 21	AC3	C	873	877	Right-handed 310
Helix 22	AC4	C	920	924	Right-handed 310
Helix 23	AC5	C	981	985	Right-handed 310
Helix 24	AC6	C	993	1000	Right-handed alpha
Helix 25	AC7	C	1105	1110	Right-handed alpha
Helix 26	AC8	C	1280	1284	Right-handed 310
Helix 27	AC9	C	1339	1343	Right-handed 310
Helix 28	AD1	C	1493	1495	Right-handed 310
Helix 29	AD2	C	1496	1502	Right-handed alpha
Helix 30	AD3	D	149	153	Right-handed 310
Helix 31	AD4	D	184	194	Right-handed alpha
Helix 32	AD5	D	250	253	Right-handed 310
Helix 33	AD6	D	254	264	Right-handed alpha
Helix 34	AD7	D	291	306	Right-handed alpha
Helix 35	AD8	D	322	328	Right-handed alpha
Helix 36	AD9	D	335	339	Right-handed 310
Helix 37	AE1	D	353	358	Right-handed alpha
Helix 38	AE2	D	386	391	Right-handed alpha
Helix 39	AE3	D	400	405	Right-handed alpha
Helix 40	AE4	D	418	426	Right-handed alpha
Helix 41	AE5	D	467	471	Right-handed 310
Helix 42	AE6	D	478	488	Right-handed alpha
Helix 43	AE7	D	492	496	Right-handed 310
Helix 44	AE8	D	568	582	Right-handed alpha
Helix 45	AE9	D	815	821	Right-handed alpha
Helix 46	AF1	D	873	877	Right-handed 310
Helix 47	AF2	D	920	924	Right-handed 310
Helix 48	AF3	D	981	985	Right-handed 310
Helix 49	AF4	D	993	1000	Right-handed alpha
Helix 50	AF5	D	1105	1110	Right-handed alpha
Helix 51	AF6	D	1280	1284	Right-handed 310
Helix 52	AF7	D	1339	1343	Right-handed 310
Helix 53	AF8	D	1493	1495	Right-handed 310
Helix 54	AF9	D	1496	1501	Right-handed alpha

There are 45 sheets in PDB entry 8HGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	109	116	anti-parallel
Strand 3	A	216	221	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	156	163	anti-parallel
Strand 3	A	197	201	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	109	116	anti-parallel
Strand 3	B	216	221	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	156	163	anti-parallel
Strand 3	B	197	201	anti-parallel
Strand 4	B	207	210	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	128	132	anti-parallel
Strand 3	C	116	123	anti-parallel
Strand 4	C	39	47	anti-parallel
Strand 5	C	177	179	anti-parallel
Strand 6	C	204	207	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	128	132	anti-parallel
Strand 3	C	116	123	anti-parallel
Strand 4	C	39	47	anti-parallel
Strand 5	C	171	173	anti-parallel
Strand 6	C	15	19	anti-parallel
Strand 7	C	227	230	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	88	95	anti-parallel
Strand 3	C	72	79	anti-parallel
Strand 4	C	55	62	anti-parallel
Strand 5	C	156	160	anti-parallel
Strand 6	C	26	28	anti-parallel
Strand 7	C	217	219	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	321	first strand
Strand 2	C	271	281	parallel
Strand 3	C	433	437	parallel
Strand 4	C	464	466	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	415	417	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	600	604	first strand
Strand 2	C	609	612	anti-parallel
Strand 3	C	827	830	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	642	first strand
Strand 2	C	783	791	anti-parallel
Strand 3	C	713	722	anti-parallel
Strand 4	C	759	762	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	647	first strand
Strand 2	C	701	711	anti-parallel
Strand 3	C	770	777	anti-parallel
Strand 4	C	733	740	anti-parallel
Strand 5	C	745	748	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	810	first strand
Strand 2	C	838	846	anti-parallel
Strand 3	C	858	861	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	901	903	first strand
Strand 2	C	910	912	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	939	943	first strand
Strand 2	C	1091	1101	anti-parallel
Strand 3	C	1018	1026	anti-parallel
Strand 4	C	1063	1067	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	945	949	first strand
Strand 2	C	1004	1014	anti-parallel
Strand 3	C	1079	1086	anti-parallel
Strand 4	C	1037	1044	anti-parallel
Strand 5	C	1049	1056	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1069	1071	first strand
Strand 2	D	1069	1071	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1143	1147	first strand
Strand 2	C	1157	1162	anti-parallel
Strand 3	C	1184	1190	anti-parallel
Strand 4	C	1193	1194	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1175	1176	first strand
Strand 2	C	1166	1172	anti-parallel
Strand 3	C	1197	1202	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1216	1219	first strand
Strand 2	C	1229	1234	anti-parallel
Strand 3	C	1246	1248	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1238	1242	first strand
Strand 2	C	1260	1264	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1275	1277	first strand
Strand 2	C	1292	1297	anti-parallel
Strand 3	C	1314	1318	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1346	1348	first strand
Strand 2	C	1358	1360	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1408	1411	first strand
Strand 2	C	1421	1426	anti-parallel
Strand 3	C	1456	1458	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1431	1435	first strand
Strand 2	C	1472	1476	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	128	132	anti-parallel
Strand 3	D	116	123	anti-parallel
Strand 4	D	39	47	anti-parallel
Strand 5	D	177	179	anti-parallel
Strand 6	D	204	207	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	128	132	anti-parallel
Strand 3	D	116	123	anti-parallel
Strand 4	D	39	47	anti-parallel
Strand 5	D	171	173	anti-parallel
Strand 6	D	15	19	anti-parallel
Strand 7	D	227	230	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	88	95	anti-parallel
Strand 3	D	72	79	anti-parallel
Strand 4	D	55	62	anti-parallel
Strand 5	D	156	160	anti-parallel
Strand 6	D	26	28	anti-parallel
Strand 7	D	217	219	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	321	first strand
Strand 2	D	271	281	parallel
Strand 3	D	433	437	parallel
Strand 4	D	464	466	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	415	417	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	600	604	first strand
Strand 2	D	609	612	anti-parallel
Strand 3	D	827	830	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	640	642	first strand
Strand 2	D	783	791	anti-parallel
Strand 3	D	713	722	anti-parallel
Strand 4	D	759	762	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	645	647	first strand
Strand 2	D	701	711	anti-parallel
Strand 3	D	770	777	anti-parallel
Strand 4	D	733	740	anti-parallel
Strand 5	D	745	748	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	810	first strand
Strand 2	D	838	846	anti-parallel
Strand 3	D	858	861	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	903	first strand
Strand 2	D	910	912	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	939	943	first strand
Strand 2	D	1091	1101	anti-parallel
Strand 3	D	1018	1026	anti-parallel
Strand 4	D	1065	1067	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	945	949	first strand
Strand 2	D	1004	1014	anti-parallel
Strand 3	D	1079	1086	anti-parallel
Strand 4	D	1037	1044	anti-parallel
Strand 5	D	1049	1056	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1143	1147	first strand
Strand 2	D	1157	1162	anti-parallel
Strand 3	D	1184	1190	anti-parallel
Strand 4	D	1193	1194	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1175	1176	first strand
Strand 2	D	1166	1172	anti-parallel
Strand 3	D	1197	1202	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1216	1219	first strand
Strand 2	D	1229	1234	anti-parallel
Strand 3	D	1246	1248	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1239	1242	first strand
Strand 2	D	1260	1263	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1275	1277	first strand
Strand 2	D	1292	1297	anti-parallel
Strand 3	D	1314	1318	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1346	1348	first strand
Strand 2	D	1358	1360	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1408	1411	first strand
Strand 2	D	1421	1426	anti-parallel
Strand 3	D	1456	1458	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1431	1435	first strand
Strand 2	D	1472	1476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGG