Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HGH entry

There are 4 chains in PDB entry 8HGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	HIS 1536
B	PRO 13	HIS 1536
C	LYS 42	THR 212
G	LYS 42	THR 212

There are 66 helices in PDB entry 8HGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	153	Right-handed 310
Helix 2	AA2	A	184	195	Right-handed alpha
Helix 3	AA3	A	212	215	Right-handed 310
Helix 4	AA4	A	250	253	Right-handed 310
Helix 5	AA5	A	254	259	Right-handed alpha
Helix 6	AA6	A	259	264	Right-handed alpha
Helix 7	AA7	A	291	307	Right-handed alpha
Helix 8	AA8	A	322	327	Right-handed alpha
Helix 9	AA9	A	336	341	Right-handed alpha
Helix 10	AB1	A	353	358	Right-handed alpha
Helix 11	AB2	A	400	405	Right-handed alpha
Helix 12	AB3	A	418	426	Right-handed alpha
Helix 13	AB4	A	473	477	Right-handed 310
Helix 14	AB5	A	478	488	Right-handed alpha
Helix 15	AB6	A	569	582	Right-handed alpha
Helix 16	AB7	A	815	820	Right-handed alpha
Helix 17	AB8	A	873	877	Right-handed 310
Helix 18	AB9	A	993	1001	Right-handed alpha
Helix 19	AC1	A	1105	1110	Right-handed alpha
Helix 20	AC2	A	1279	1284	Right-handed 310
Helix 21	AC3	A	1496	1501	Right-handed alpha
Helix 22	AC4	A	1504	1508	Right-handed 310
Helix 23	AC5	B	149	153	Right-handed 310
Helix 24	AC6	B	184	195	Right-handed alpha
Helix 25	AC7	B	212	216	Right-handed alpha
Helix 26	AC8	B	250	253	Right-handed 310
Helix 27	AC9	B	254	259	Right-handed alpha
Helix 28	AD1	B	259	264	Right-handed alpha
Helix 29	AD2	B	291	307	Right-handed alpha
Helix 30	AD3	B	322	327	Right-handed alpha
Helix 31	AD4	B	336	341	Right-handed alpha
Helix 32	AD5	B	353	359	Right-handed alpha
Helix 33	AD6	B	400	405	Right-handed alpha
Helix 34	AD7	B	418	426	Right-handed alpha
Helix 35	AD8	B	478	487	Right-handed alpha
Helix 36	AD9	B	571	582	Right-handed alpha
Helix 37	AE1	B	815	820	Right-handed alpha
Helix 38	AE2	B	873	877	Right-handed 310
Helix 39	AE3	B	993	1001	Right-handed alpha
Helix 40	AE4	B	1279	1284	Right-handed 310
Helix 41	AE5	B	1493	1495	Right-handed 310
Helix 42	AE6	B	1496	1502	Right-handed alpha
Helix 43	AE7	B	1504	1508	Right-handed 310
Helix 44	AE8	C	44	48	Right-handed 310
Helix 45	AE9	C	51	60	Right-handed alpha
Helix 46	AF1	C	65	72	Right-handed alpha
Helix 47	AF2	C	80	89	Right-handed alpha
Helix 48	AF3	C	91	95	Right-handed 310
Helix 49	AF4	C	96	117	Right-handed alpha
Helix 50	AF5	C	124	142	Right-handed alpha
Helix 51	AF6	C	144	152	Right-handed alpha
Helix 52	AF7	C	152	159	Right-handed alpha
Helix 53	AF8	C	168	182	Right-handed alpha
Helix 54	AF9	C	182	200	Right-handed alpha
Helix 55	AG1	C	202	207	Right-handed alpha
Helix 56	AG2	G	49	60	Right-handed alpha
Helix 57	AG3	G	65	72	Right-handed alpha
Helix 58	AG4	G	80	89	Right-handed alpha
Helix 59	AG5	G	91	95	Right-handed 310
Helix 60	AG6	G	96	117	Right-handed alpha
Helix 61	AG7	G	124	142	Right-handed alpha
Helix 62	AG8	G	144	152	Right-handed alpha
Helix 63	AG9	G	152	159	Right-handed alpha
Helix 64	AH1	G	168	179	Right-handed alpha
Helix 65	AH2	G	182	200	Right-handed alpha
Helix 66	AH3	G	202	207	Right-handed alpha

There are 44 sheets in PDB entry 8HGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	39	47	anti-parallel
Strand 5	A	171	179	anti-parallel
Strand 6	A	204	209	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	128	132	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	39	47	anti-parallel
Strand 5	A	171	179	anti-parallel
Strand 6	A	15	19	anti-parallel
Strand 7	A	227	230	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	88	95	anti-parallel
Strand 3	A	72	79	anti-parallel
Strand 4	A	56	62	anti-parallel
Strand 5	A	156	160	anti-parallel
Strand 6	A	26	28	anti-parallel
Strand 7	A	217	219	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	315	first strand
Strand 2	A	271	281	parallel
Strand 3	A	318	321	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	315	first strand
Strand 2	A	271	281	parallel
Strand 3	A	433	437	parallel
Strand 4	A	464	466	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	415	417	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	604	first strand
Strand 2	A	609	612	anti-parallel
Strand 3	A	827	830	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	634	first strand
Strand 2	A	638	642	anti-parallel
Strand 3	A	783	791	anti-parallel
Strand 4	A	713	722	anti-parallel
Strand 5	A	759	762	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	647	first strand
Strand 2	A	701	711	anti-parallel
Strand 3	A	770	777	anti-parallel
Strand 4	A	733	738	anti-parallel
Strand 5	A	746	748	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	810	first strand
Strand 2	A	838	846	anti-parallel
Strand 3	A	858	861	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	903	first strand
Strand 2	A	910	911	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	940	943	first strand
Strand 2	A	1093	1100	anti-parallel
Strand 3	A	1018	1023	anti-parallel
Strand 4	A	1063	1067	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	949	first strand
Strand 2	A	1004	1014	anti-parallel
Strand 3	A	1079	1086	anti-parallel
Strand 4	A	1043	1044	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	949	first strand
Strand 2	A	1004	1014	anti-parallel
Strand 3	A	1079	1086	anti-parallel
Strand 4	A	1037	1040	anti-parallel
Strand 5	A	1054	1056	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	B	1069	1071	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1143	1144	first strand
Strand 2	A	1157	1162	anti-parallel
Strand 3	A	1184	1190	anti-parallel
Strand 4	A	1193	1194	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1172	first strand
Strand 2	A	1196	1202	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1216	1219	first strand
Strand 2	A	1229	1234	anti-parallel
Strand 3	A	1246	1248	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1265	1266	first strand
Strand 2	A	1287	1288	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1275	1277	first strand
Strand 2	A	1292	1297	anti-parallel
Strand 3	A	1314	1318	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1301	1302	first strand
Strand 2	A	1331	1332	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1409	1410	first strand
Strand 2	A	1424	1425	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1431	1435	first strand
Strand 2	A	1472	1476	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	175	179	anti-parallel
Strand 6	B	204	209	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	171	173	anti-parallel
Strand 6	B	15	19	anti-parallel
Strand 7	B	227	230	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	88	95	anti-parallel
Strand 3	B	72	79	anti-parallel
Strand 4	B	56	62	anti-parallel
Strand 5	B	156	160	anti-parallel
Strand 6	B	26	28	anti-parallel
Strand 7	B	217	219	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	271	281	parallel
Strand 3	B	434	437	parallel
Strand 4	B	464	466	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	415	417	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	604	first strand
Strand 2	B	609	612	anti-parallel
Strand 3	B	827	830	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	642	first strand
Strand 2	B	783	791	anti-parallel
Strand 3	B	713	722	anti-parallel
Strand 4	B	759	762	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	647	first strand
Strand 2	B	701	711	anti-parallel
Strand 3	B	770	777	anti-parallel
Strand 4	B	733	738	anti-parallel
Strand 5	B	746	748	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	810	first strand
Strand 2	B	838	846	anti-parallel
Strand 3	B	858	861	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	902	903	first strand
Strand 2	B	910	911	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	940	943	first strand
Strand 2	B	1093	1100	anti-parallel
Strand 3	B	1018	1023	anti-parallel
Strand 4	B	1063	1067	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	949	first strand
Strand 2	B	1004	1014	anti-parallel
Strand 3	B	1079	1086	anti-parallel
Strand 4	B	1043	1044	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	949	first strand
Strand 2	B	1004	1014	anti-parallel
Strand 3	B	1079	1086	anti-parallel
Strand 4	B	1037	1040	anti-parallel
Strand 5	B	1054	1056	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1143	1144	first strand
Strand 2	B	1157	1162	anti-parallel
Strand 3	B	1184	1190	anti-parallel
Strand 4	B	1193	1194	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1166	1172	first strand
Strand 2	B	1196	1202	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1216	1219	first strand
Strand 2	B	1229	1234	anti-parallel
Strand 3	B	1246	1248	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1265	1266	first strand
Strand 2	B	1287	1288	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1275	1277	first strand
Strand 2	B	1292	1297	anti-parallel
Strand 3	B	1314	1318	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1301	1302	first strand
Strand 2	B	1331	1332	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1408	1411	first strand
Strand 2	B	1423	1426	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1431	1435	first strand
Strand 2	B	1472	1476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGH