Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HGM entry

There are 3 chains in PDB entry 8HGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ASN 334PRO 527
C
GLN 1SER 223
D
GLU 1CYS 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8HGM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
337 343Right-handed alpha
Helix 2
AA2
B
349 353Right-handed 310
Helix 3
AA3
B
365 370Right-handed alpha
Helix 4
AA4
B
383 387Right-handed 310
Helix 5
AA5
B
405 410Right-handed 310
Helix 6
AA6
B
416 422Right-handed alpha
Helix 7
AA7
B
438 443Right-handed alpha
Helix 8
AA8
B
502 505Right-handed 310
Helix 9
AA9
C
26 29Right-handed 310
Helix 10
AB1
C
85 89Right-handed 310
Helix 11
AB2
C
164 166Right-handed 310
Helix 12
AB3
D
80 84Right-handed 310
Helix 13
AB4
D
122 129Right-handed alpha
Helix 14
AB5
D
184 189Right-handed alpha
Helix 15
AB6
D
213 215Right-handed 310
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There are 12 sheets in PDB entry 8HGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 4first strand
Strand 2
C
15 22anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
66 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 10first strand
Strand 2
C
115 119parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
43 50anti-parallel
Strand 6
C
56 58anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 10first strand
Strand 2
C
115 119parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
110 111anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
128 132first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
184 193anti-parallel
Strand 4
C
171 173anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
128 132first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
184 193anti-parallel
Strand 4
C
177 178anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
159 162first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
213 218anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
63 66anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
103 106parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 50anti-parallel
Strand 6
D
54 55anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
115 119first strand
Strand 2
D
130 140anti-parallel
Strand 3
D
174 183anti-parallel
Strand 4
D
161 164anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
154 155first strand
Strand 2
D
145 151anti-parallel
Strand 3
D
192 199anti-parallel
Strand 4
D
206 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il