Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HGP entry

There are 3 chains in PDB entry 8HGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 24	ARG 599
A	GLU 27	THR 594
C	LYS 5	PHE 45

There are 21 helices in PDB entry 8HGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	50	Right-handed alpha
Helix 2	AA2	B	71	75	Right-handed 310
Helix 3	AA3	B	168	173	Right-handed alpha
Helix 4	AA4	B	361	365	Right-handed 310
Helix 5	AA5	B	377	382	Right-handed 310
Helix 6	AA6	B	395	402	Right-handed 310
Helix 7	AA7	B	422	426	Right-handed 310
Helix 8	AA8	B	436	439	Right-handed 310
Helix 9	AA9	B	501	506	Right-handed alpha
Helix 10	AB1	B	515	519	Right-handed 310
Helix 11	AB2	B	580	584	Right-handed 310
Helix 12	AB3	A	43	55	Right-handed alpha
Helix 13	AB4	A	76	82	Right-handed 310
Helix 14	AB5	A	194	198	Right-handed 310
Helix 15	AB6	A	354	360	Right-handed 310
Helix 16	AB7	A	388	397	Right-handed 310
Helix 17	AB8	A	417	421	Right-handed 310
Helix 18	AB9	A	431	434	Right-handed 310
Helix 19	AC1	A	476	480	Right-handed 310
Helix 20	AC2	A	519	523	Right-handed 310
Helix 21	AC3	C	7	11	Right-handed 310

There are 19 sheets in PDB entry 8HGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	79	80	parallel
Strand 3	B	101	102	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	84	87	parallel
Strand 3	B	114	117	parallel
Strand 4	B	153	156	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	281	283	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	294	296	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	332	333	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	369	371	parallel
Strand 3	B	405	406	parallel
Strand 4	B	430	431	parallel
Strand 5	B	460	461	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	410	412	parallel
Strand 3	B	441	446	parallel
Strand 4	B	465	469	parallel
Strand 5	B	493	495	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	555	first strand
Strand 2	B	560	562	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	60	61	parallel
Strand 3	A	84	85	parallel
Strand 4	A	106	107	parallel
Strand 5	A	142	143	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	C	31	32	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	89	94	parallel
Strand 3	A	119	122	parallel
Strand 4	A	148	151	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	248	251	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	260	261	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	300	301	anti-parallel
Strand 3	A	324	327	parallel
Strand 4	A	316	317	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	400	401	parallel
Strand 3	A	425	426	parallel
Strand 4	A	455	456	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	405	407	parallel
Strand 3	A	436	440	parallel
Strand 4	A	460	463	parallel
Strand 5	A	489	490	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	556	557	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	590	592	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	43	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGP