Analysis of interatomic Contacts of Structural Units in PDB entry:
8HGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HGU entry

There are 4 chains in PDB entry 8HGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 296
B
 SER 3GLY 296
C
 SER 2GLY 296
D
 SER 2GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8HGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 47Right-handed 310
Helix 2
AA2
A
48 56Right-handed alpha
Helix 3
AA3
A
83 98Right-handed alpha
Helix 4
AA4
A
109 122Right-handed alpha
Helix 5
AA5
A
139 144Right-handed 310
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
160 168Right-handed alpha
Helix 9
AA9
A
170 185Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
195 205Right-handed alpha
Helix 12
AB3
A
207 228Right-handed alpha
Helix 13
AB4
A
253 260Right-handed 310
Helix 14
AB5
A
278 283Right-handed alpha
Helix 15
AB6
A
283 295Right-handed alpha
Helix 16
AB7
B
44 47Right-handed 310
Helix 17
AB8
B
48 56Right-handed alpha
Helix 18
AB9
B
83 98Right-handed alpha
Helix 19
AC1
B
109 122Right-handed alpha
Helix 20
AC2
B
136 144Right-handed 310
Helix 21
AC3
B
147 151Right-handed 310
Helix 22
AC4
B
152 158Right-handed alpha
Helix 23
AC5
B
160 168Right-handed alpha
Helix 24
AC6
B
170 185Right-handed alpha
Helix 25
AC7
B
192 194Right-handed 310
Helix 26
AC8
B
195 205Right-handed alpha
Helix 27
AC9
B
207 228Right-handed alpha
Helix 28
AD1
B
253 258Right-handed 310
Helix 29
AD2
B
259 264Right-handed alpha
Helix 30
AD3
B
278 283Right-handed alpha
Helix 31
AD4
B
283 296Right-handed alpha
Helix 32
AD5
C
44 47Right-handed 310
Helix 33
AD6
C
48 56Right-handed alpha
Helix 34
AD7
C
83 98Right-handed alpha
Helix 35
AD8
C
109 122Right-handed alpha
Helix 36
AD9
C
139 144Right-handed 310
Helix 37
AE1
C
147 151Right-handed 310
Helix 38
AE2
C
152 158Right-handed alpha
Helix 39
AE3
C
160 168Right-handed alpha
Helix 40
AE4
C
170 185Right-handed alpha
Helix 41
AE5
C
192 194Right-handed 310
Helix 42
AE6
C
195 205Right-handed alpha
Helix 43
AE7
C
207 228Right-handed alpha
Helix 44
AE8
C
253 263Right-handed 310
Helix 45
AE9
C
278 283Right-handed alpha
Helix 46
AF1
C
283 296Right-handed alpha
Helix 47
AF2
D
44 47Right-handed 310
Helix 48
AF3
D
48 56Right-handed alpha
Helix 49
AF4
D
83 98Right-handed alpha
Helix 50
AF5
D
109 122Right-handed alpha
Helix 51
AF6
D
136 144Right-handed 310
Helix 52
AF7
D
148 158Right-handed alpha
Helix 53
AF8
D
160 168Right-handed alpha
Helix 54
AF9
D
170 185Right-handed alpha
Helix 55
AG1
D
192 194Right-handed 310
Helix 56
AG2
D
195 205Right-handed alpha
Helix 57
AG3
D
207 228Right-handed alpha
Helix 58
AG4
D
253 258Right-handed 310
Helix 59
AG5
D
259 264Right-handed alpha
Helix 60
AG6
D
278 283Right-handed alpha
Helix 61
AG7
D
283 296Right-handed alpha
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There are 3 sheets in PDB entry 8HGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
35 38parallel
Strand 5
A
103 107parallel
Strand 6
A
126 131parallel
Strand 7
A
241 246parallel
Strand 8
A
267 272parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 18first strand
Strand 2
B
21 28anti-parallel
Strand 3
B
60 64anti-parallel
Strand 4
B
34 38parallel
Strand 5
B
103 107parallel
Strand 6
B
126 131parallel
Strand 7
B
241 246parallel
Strand 8
B
267 272parallel
Strand 9
D
266 272anti-parallel
Strand 10
D
241 246parallel
Strand 11
D
126 131parallel
Strand 12
D
103 107parallel
Strand 13
D
33 38parallel
Strand 14
D
59 64parallel
Strand 15
D
21 28anti-parallel
Strand 16
D
12 18anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 18first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
59 64anti-parallel
Strand 4
C
33 38parallel
Strand 5
C
103 107parallel
Strand 6
C
126 131parallel
Strand 7
C
241 246parallel
Strand 8
C
267 272parallel
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