Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HHE entry

There are 2 chains in PDB entry 8HHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	GLN 698
B	SER 27	GLN 698

There are 30 helices in PDB entry 8HHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	43	Right-handed alpha
Helix 2	AA2	A	48	65	Right-handed alpha
Helix 3	AA3	A	68	78	Right-handed alpha
Helix 4	AA4	A	91	101	Right-handed alpha
Helix 5	AA5	A	118	126	Right-handed alpha
Helix 6	AA6	A	140	162	Right-handed alpha
Helix 7	AA7	A	186	208	Right-handed alpha
Helix 8	AA8	A	228	257	Right-handed alpha
Helix 9	AA9	A	261	290	Right-handed alpha
Helix 10	AB1	A	298	316	Right-handed alpha
Helix 11	AB2	A	316	321	Right-handed alpha
Helix 12	AB3	A	322	327	Right-handed 310
Helix 13	AB4	A	362	366	Right-handed 310
Helix 14	AB5	A	488	496	Right-handed alpha
Helix 15	AB6	A	570	577	Right-handed 310
Helix 16	AB7	B	28	43	Right-handed alpha
Helix 17	AB8	B	48	65	Right-handed alpha
Helix 18	AB9	B	68	78	Right-handed alpha
Helix 19	AC1	B	92	101	Right-handed alpha
Helix 20	AC2	B	118	126	Right-handed alpha
Helix 21	AC3	B	140	162	Right-handed alpha
Helix 22	AC4	B	186	208	Right-handed alpha
Helix 23	AC5	B	228	257	Right-handed alpha
Helix 24	AC6	B	261	290	Right-handed alpha
Helix 25	AC7	B	298	316	Right-handed alpha
Helix 26	AC8	B	316	321	Right-handed alpha
Helix 27	AC9	B	322	327	Right-handed 310
Helix 28	AD1	B	362	366	Right-handed 310
Helix 29	AD2	B	488	496	Right-handed alpha
Helix 30	AD3	B	570	577	Right-handed 310

There are 12 sheets in PDB entry 8HHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	562	565	parallel
Strand 3	A	686	694	anti-parallel
Strand 4	A	590	593	anti-parallel
Strand 5	A	580	581	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	562	565	parallel
Strand 3	A	686	694	anti-parallel
Strand 4	A	609	619	anti-parallel
Strand 5	A	658	669	anti-parallel
Strand 6	A	652	653	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	531	538	anti-parallel
Strand 3	A	510	520	anti-parallel
Strand 4	A	368	370	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	415	423	anti-parallel
Strand 3	A	398	406	anti-parallel
Strand 4	A	445	451	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	471	478	anti-parallel
Strand 3	A	456	463	anti-parallel
Strand 4	A	500	501	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	597	605	parallel
Strand 3	A	672	680	anti-parallel
Strand 4	A	623	630	anti-parallel
Strand 5	A	636	642	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	562	565	parallel
Strand 3	B	686	695	anti-parallel
Strand 4	B	590	593	anti-parallel
Strand 5	B	580	581	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	562	565	parallel
Strand 3	B	686	695	anti-parallel
Strand 4	B	609	619	anti-parallel
Strand 5	B	658	669	anti-parallel
Strand 6	B	652	653	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	510	520	anti-parallel
Strand 3	B	531	538	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	432	first strand
Strand 2	B	415	423	anti-parallel
Strand 3	B	398	406	anti-parallel
Strand 4	B	445	451	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	470	478	anti-parallel
Strand 3	B	456	464	anti-parallel
Strand 4	B	500	501	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	547	first strand
Strand 2	B	597	605	parallel
Strand 3	B	672	680	anti-parallel
Strand 4	B	623	630	anti-parallel
Strand 5	B	636	642	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHE