Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HHH entry

There are 3 chains in PDB entry 8HHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
 GLY 22PRO 260
B
 MET 1PRO 89
L
 PRO 39VAL 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8HHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Q
22 52Right-handed alpha
Helix 2
AA2
Q
70 80Right-handed alpha
Helix 3
AA3
Q
91 103Right-handed alpha
Helix 4
AA4
Q
148 152Right-handed 310
Helix 5
AA5
Q
166 183Right-handed alpha
Helix 6
AA6
Q
215 233Right-handed alpha
Helix 7
AA7
B
2 21Right-handed alpha
Helix 8
AA8
B
25 61Right-handed alpha
Helix 9
AA9
B
64 76Right-handed alpha
Helix 10
AB1
L
40 92Right-handed alpha
Helix 11
AB2
L
93 102Right-handed alpha
Helix 12
AB3
L
103 105Right-handed 310
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There are 3 sheets in PDB entry 8HHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
60 63first strand
Strand 2
Q
119 125parallel
Strand 3
Q
106 113anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
131 132first strand
Strand 2
Q
159 161parallel
Strand 3
Q
190 193parallel
Strand 4
Q
199 203anti-parallel
Strand 5
Q
207 210anti-parallel
Strand 6
Q
243 245parallel
Strand 7
Q
251 254anti-parallel
Strand 8
B
83 88anti-parallel
Strand 9
L
115 118parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
136 138first strand
Strand 2
Q
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il