Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HHJ entry

There are 2 chains in PDB entry 8HHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ILE 103
B
 ILE 323LEU 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8HHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
50 69Right-handed alpha
Helix 3
AA3
A
85 91Right-handed alpha
Helix 4
AA4
B
328 333Right-handed alpha
Helix 5
AA5
B
334 336Right-handed 310
Helix 6
AA6
B
354 364Right-handed alpha
Helix 7
AA7
B
374 376Right-handed 310
Helix 8
AA8
B
414 420Right-handed alpha
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There are 3 sheets in PDB entry 8HHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 81first strand
Strand 2
A
38 45parallel
Strand 3
A
25 33anti-parallel
Strand 4
A
95 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
387 388anti-parallel
Strand 3
B
395 396anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
378 381anti-parallel
Strand 3
B
398 404anti-parallel
Strand 4
B
407 412anti-parallel
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