Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HHL entry

There are 4 chains in PDB entry 8HHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A -28 C 20
C
 T -3 A 27
D
 T -10 A 20
A
 MET 1ALA 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8HHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 52Right-handed alpha
Helix 2
AA2
A
53 85Right-handed alpha
Helix 3
AA3
A
90 118Right-handed alpha
Helix 4
AA4
A
119 121Right-handed 310
Helix 5
AA5
A
122 145Right-handed alpha
Helix 6
AA6
A
151 176Right-handed alpha
Helix 7
AA7
A
206 211Right-handed alpha
Helix 8
AA8
A
228 233Right-handed alpha
Helix 9
AA9
A
236 244Right-handed alpha
Helix 10
AB1
A
341 345Right-handed 310
Helix 11
AB2
A
362 397Right-handed alpha
Helix 12
AB3
A
408 414Right-handed alpha
Helix 13
AB4
A
417 428Right-handed alpha
Helix 14
AB5
A
429 431Right-handed 310
Helix 15
AB6
A
434 479Right-handed alpha
Helix 16
AB7
A
488 500Right-handed alpha
Helix 17
AB8
A
503 518Right-handed alpha
Helix 18
AB9
A
518 534Right-handed alpha
Helix 19
AC1
A
560 564Right-handed 310
Helix 20
AC2
A
579 591Right-handed alpha
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There are 3 sheets in PDB entry 8HHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
278 288anti-parallel
Strand 3
A
291 302anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
258 267anti-parallel
Strand 6
A
245 255anti-parallel
Strand 7
A
221 222anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 360first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
313 323anti-parallel
Strand 4
A
481 485parallel
Strand 5
A
537 540parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
575 576anti-parallel
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