Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HHV entry

There are 4 chains in PDB entry 8HHV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ARG 480
B	THR 2	ARG 480
C	THR 2	ARG 480
D	THR 2	ARG 480

There are 20 helices in PDB entry 8HHV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	210	212	Right-handed 310
Helix 4	AA4	A	214	218	Right-handed 310
Helix 5	AA5	A	229	233	Right-handed 310
Helix 6	AA6	B	22	28	Right-handed alpha
Helix 7	AA7	B	82	86	Right-handed 310
Helix 8	AA8	B	210	212	Right-handed 310
Helix 9	AA9	B	214	218	Right-handed 310
Helix 10	AB1	B	229	233	Right-handed 310
Helix 11	AB2	C	22	28	Right-handed alpha
Helix 12	AB3	C	82	86	Right-handed 310
Helix 13	AB4	C	210	212	Right-handed 310
Helix 14	AB5	C	214	218	Right-handed 310
Helix 15	AB6	C	229	233	Right-handed 310
Helix 16	AB7	D	22	28	Right-handed alpha
Helix 17	AB8	D	82	86	Right-handed 310
Helix 18	AB9	D	210	212	Right-handed 310
Helix 19	AC1	D	214	218	Right-handed 310
Helix 20	AC2	D	229	233	Right-handed 310

There are 36 sheets in PDB entry 8HHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	317	325	anti-parallel
Strand 3	A	305	312	anti-parallel
Strand 4	A	292	297	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	317	325	anti-parallel
Strand 3	A	331	332	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	45	49	anti-parallel
Strand 3	A	74	78	anti-parallel
Strand 4	A	91	92	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	124	first strand
Strand 2	A	127	138	anti-parallel
Strand 3	A	144	154	anti-parallel
Strand 4	A	162	169	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	185	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	200	208	anti-parallel
Strand 4	A	219	221	anti-parallel
Strand 5	A	226	227	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	185	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	200	208	anti-parallel
Strand 4	A	237	241	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	249	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	264	270	anti-parallel
Strand 4	A	281	284	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	386	394	anti-parallel
Strand 3	A	453	461	anti-parallel
Strand 4	A	416	421	anti-parallel
Strand 5	A	427	433	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	366	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	467	478	anti-parallel
Strand 4	A	400	409	anti-parallel
Strand 5	A	440	447	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	317	325	anti-parallel
Strand 3	B	305	312	anti-parallel
Strand 4	B	292	297	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	317	325	anti-parallel
Strand 3	B	331	332	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	124	first strand
Strand 2	B	127	138	anti-parallel
Strand 3	B	144	154	anti-parallel
Strand 4	B	162	169	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	185	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	219	221	anti-parallel
Strand 5	B	226	227	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	185	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	237	241	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	249	first strand
Strand 2	B	254	261	anti-parallel
Strand 3	B	264	270	anti-parallel
Strand 4	B	281	284	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	386	394	anti-parallel
Strand 3	B	453	461	anti-parallel
Strand 4	B	416	421	anti-parallel
Strand 5	B	427	433	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	366	first strand
Strand 2	B	376	382	anti-parallel
Strand 3	B	467	478	anti-parallel
Strand 4	B	400	409	anti-parallel
Strand 5	B	440	447	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	317	325	anti-parallel
Strand 3	C	305	312	anti-parallel
Strand 4	C	292	297	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	317	325	anti-parallel
Strand 3	C	331	332	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	74	78	anti-parallel
Strand 4	C	91	92	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	124	first strand
Strand 2	C	127	138	anti-parallel
Strand 3	C	144	154	anti-parallel
Strand 4	C	162	169	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	185	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	200	208	anti-parallel
Strand 4	C	219	221	anti-parallel
Strand 5	C	226	227	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	185	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	200	208	anti-parallel
Strand 4	C	237	241	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	249	first strand
Strand 2	C	254	261	anti-parallel
Strand 3	C	264	270	anti-parallel
Strand 4	C	281	284	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	386	394	anti-parallel
Strand 3	C	453	461	anti-parallel
Strand 4	C	416	421	anti-parallel
Strand 5	C	427	433	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	366	first strand
Strand 2	C	376	382	anti-parallel
Strand 3	C	467	478	anti-parallel
Strand 4	C	400	409	anti-parallel
Strand 5	C	440	447	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	317	325	anti-parallel
Strand 3	D	305	312	anti-parallel
Strand 4	D	292	297	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	317	325	anti-parallel
Strand 3	D	331	332	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	45	49	anti-parallel
Strand 3	D	74	78	anti-parallel
Strand 4	D	91	92	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	124	first strand
Strand 2	D	127	138	anti-parallel
Strand 3	D	144	154	anti-parallel
Strand 4	D	162	169	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	185	first strand
Strand 2	D	188	194	anti-parallel
Strand 3	D	200	208	anti-parallel
Strand 4	D	219	221	anti-parallel
Strand 5	D	226	227	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	185	first strand
Strand 2	D	188	194	anti-parallel
Strand 3	D	200	208	anti-parallel
Strand 4	D	237	241	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	249	first strand
Strand 2	D	254	261	anti-parallel
Strand 3	D	264	270	anti-parallel
Strand 4	D	281	284	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	358	first strand
Strand 2	D	386	394	anti-parallel
Strand 3	D	453	461	anti-parallel
Strand 4	D	416	421	anti-parallel
Strand 5	D	427	433	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	366	first strand
Strand 2	D	376	382	anti-parallel
Strand 3	D	467	478	anti-parallel
Strand 4	D	400	409	anti-parallel
Strand 5	D	440	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HHV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHV