Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HHX entry

There are 7 chains in PDB entry 8HHX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 25	PRO 1140
B	PRO 25	PRO 1140
C	PRO 25	PRO 1140
F	GLU 1	CYS 224
G	ASN 2	CYS 216
H	GLU 1	VAL 119
I	ASN 2	LEU 111

There are 61 helices in PDB entry 8HHX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	737	743	Right-handed alpha
Helix 3	AA3	A	746	757	Right-handed alpha
Helix 4	AA4	A	757	782	Right-handed alpha
Helix 5	AA5	A	816	826	Right-handed alpha
Helix 6	AA6	A	866	883	Right-handed alpha
Helix 7	AA7	A	886	890	Right-handed 310
Helix 8	AA8	A	897	909	Right-handed alpha
Helix 9	AA9	A	913	941	Right-handed alpha
Helix 10	AB1	A	945	966	Right-handed alpha
Helix 11	AB2	A	976	984	Right-handed alpha
Helix 12	AB3	A	985	1033	Right-handed alpha
Helix 13	AB4	B	294	304	Right-handed alpha
Helix 14	AB5	B	337	343	Right-handed alpha
Helix 15	AB6	B	349	353	Right-handed 310
Helix 16	AB7	B	370	374	Right-handed 310
Helix 17	AB8	B	383	387	Right-handed 310
Helix 18	AB9	B	405	407	Right-handed 310
Helix 19	AC1	B	416	422	Right-handed alpha
Helix 20	AC2	B	438	443	Right-handed alpha
Helix 21	AC3	B	502	505	Right-handed 310
Helix 22	AC4	B	737	743	Right-handed alpha
Helix 23	AC5	B	746	755	Right-handed alpha
Helix 24	AC6	B	757	782	Right-handed alpha
Helix 25	AC7	B	816	826	Right-handed alpha
Helix 26	AC8	B	866	884	Right-handed alpha
Helix 27	AC9	B	886	890	Right-handed 310
Helix 28	AD1	B	897	909	Right-handed alpha
Helix 29	AD2	B	913	941	Right-handed alpha
Helix 30	AD3	B	945	965	Right-handed alpha
Helix 31	AD4	B	976	984	Right-handed alpha
Helix 32	AD5	B	985	1032	Right-handed alpha
Helix 33	AD6	C	294	304	Right-handed alpha
Helix 34	AD7	C	337	343	Right-handed alpha
Helix 35	AD8	C	366	370	Right-handed 310
Helix 36	AD9	C	383	390	Right-handed 310
Helix 37	AE1	C	405	407	Right-handed 310
Helix 38	AE2	C	416	422	Right-handed alpha
Helix 39	AE3	C	737	743	Right-handed alpha
Helix 40	AE4	C	746	757	Right-handed alpha
Helix 41	AE5	C	757	783	Right-handed alpha
Helix 42	AE6	C	816	826	Right-handed alpha
Helix 43	AE7	C	866	884	Right-handed alpha
Helix 44	AE8	C	886	890	Right-handed 310
Helix 45	AE9	C	897	906	Right-handed alpha
Helix 46	AF1	C	907	910	Right-handed 310
Helix 47	AF2	C	913	919	Right-handed alpha
Helix 48	AF3	C	919	941	Right-handed alpha
Helix 49	AF4	C	942	944	Right-handed 310
Helix 50	AF5	C	945	968	Right-handed alpha
Helix 51	AF6	C	976	984	Right-handed alpha
Helix 52	AF7	C	985	1032	Right-handed alpha
Helix 53	AF8	F	28	32	Right-handed 310
Helix 54	AF9	F	87	91	Right-handed 310
Helix 55	AG1	G	83	87	Right-handed 310
Helix 56	AG2	G	126	132	Right-handed 310
Helix 57	AG3	G	171	175	Right-handed 310
Helix 58	AG4	G	186	193	Right-handed alpha
Helix 59	AG5	H	87	91	Right-handed 310
Helix 60	AG6	I	29	33	Right-handed 310
Helix 61	AG7	I	83	87	Right-handed 310

There are 63 sheets in PDB entry 8HHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	264	265	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	275	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	89	92	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	122	first strand
Strand 2	A	125	129	anti-parallel
Strand 3	A	169	171	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	205	first strand
Strand 2	A	224	229	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	316	317	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	649	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	539	543	parallel
Strand 3	A	549	552	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	575	577	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	C	42	43	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	1072	1076	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	719	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1050	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	722	727	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1054	1056	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1080	1082	anti-parallel
Strand 4	A	1132	1134	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1096	first strand
Strand 2	A	1103	1105	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	264	279	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	200	209	anti-parallel
Strand 6	B	224	229	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	264	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	241	anti-parallel
Strand 3	B	103	107	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	125	129	anti-parallel
Strand 3	B	169	171	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	594	598	anti-parallel
Strand 3	B	610	613	anti-parallel
Strand 4	B	648	650	anti-parallel
Strand 5	B	643	644	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	542	543	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	540	first strand
Strand 2	B	549	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	575	577	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	1074	1076	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	719	first strand
Strand 2	B	1065	1069	anti-parallel
Strand 3	B	1047	1050	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	727	first strand
Strand 2	B	1060	1062	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	790	first strand
Strand 2	C	703	704	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1133	1134	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1089	1090	first strand
Strand 2	B	1120	1121	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1097	first strand
Strand 2	B	1102	1104	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	265	267	anti-parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	192	197	anti-parallel
Strand 6	C	200	205	anti-parallel
Strand 7	C	224	228	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	276	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	239	240	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	125	129	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	285	287	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	316	317	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	610	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	538	543	parallel
Strand 3	C	549	551	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	380	first strand
Strand 2	C	431	436	anti-parallel
Strand 3	C	507	511	anti-parallel
Strand 4	C	399	403	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	514	516	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	575	577	first strand
Strand 2	C	584	586	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	667	first strand
Strand 2	C	670	673	anti-parallel
Strand 3	C	693	696	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	714	first strand
Strand 2	C	1073	1075	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	719	first strand
Strand 2	C	1065	1069	anti-parallel
Strand 3	C	1047	1050	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1053	1056	first strand
Strand 2	C	1059	1062	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1082	first strand
Strand 2	C	1133	1134	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1089	1090	first strand
Strand 2	C	1120	1121	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	20	24	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	46	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	108	111	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	58	60	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	188	189	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	23	first strand
Strand 2	G	74	79	anti-parallel
Strand 3	G	64	69	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	50	first strand
Strand 2	G	37	40	anti-parallel
Strand 3	G	89	91	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	96	first strand
Strand 2	G	99	102	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	142	first strand
Strand 2	G	178	182	anti-parallel
Strand 3	G	164	165	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	155	first strand
Strand 2	G	158	159	anti-parallel

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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	95	98	anti-parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	58	60	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	73	first strand
Strand 2	H	78	81	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HHX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHX