Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HHY entry

There are 9 chains in PDB entry 8HHY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLN 1	SER 121
W	ASP 1	ARG 107
G	SER 17	TYR 102
I	ASP 1	VAL 104
H	GLN 3	VAL 120
L	ILE 2	ASP 92
A	ALA 27	SER 1147
B	ALA 27	LEU 1145
C	ALA 27	LEU 1145

There are 67 helices in PDB entry 8HHY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	28	30	Right-handed 310
Helix 2	AA2	F	87	91	Right-handed 310
Helix 3	AA3	W	79	83	Right-handed 310
Helix 4	AA4	G	87	91	Right-handed 310
Helix 5	AA5	I	79	83	Right-handed 310
Helix 6	AA6	H	28	32	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	A	294	304	Right-handed alpha
Helix 9	AA9	A	338	343	Right-handed alpha
Helix 10	AB1	A	364	371	Right-handed alpha
Helix 11	AB2	A	383	387	Right-handed 310
Helix 12	AB3	A	405	407	Right-handed 310
Helix 13	AB4	A	416	423	Right-handed alpha
Helix 14	AB5	A	502	505	Right-handed 310
Helix 15	AB6	A	737	742	Right-handed alpha
Helix 16	AB7	A	746	755	Right-handed alpha
Helix 17	AB8	A	759	782	Right-handed alpha
Helix 18	AB9	A	816	826	Right-handed alpha
Helix 19	AC1	A	866	884	Right-handed alpha
Helix 20	AC2	A	897	908	Right-handed alpha
Helix 21	AC3	A	913	918	Right-handed alpha
Helix 22	AC4	A	919	941	Right-handed alpha
Helix 23	AC5	A	942	944	Right-handed 310
Helix 24	AC6	A	945	965	Right-handed alpha
Helix 25	AC7	A	966	968	Right-handed 310
Helix 26	AC8	A	976	984	Right-handed alpha
Helix 27	AC9	A	985	1033	Right-handed alpha
Helix 28	AD1	A	1140	1146	Right-handed alpha
Helix 29	AD2	B	294	304	Right-handed alpha
Helix 30	AD3	B	338	343	Right-handed alpha
Helix 31	AD4	B	364	371	Right-handed alpha
Helix 32	AD5	B	383	388	Right-handed 310
Helix 33	AD6	B	405	408	Right-handed 310
Helix 34	AD7	B	416	422	Right-handed alpha
Helix 35	AD8	B	438	443	Right-handed alpha
Helix 36	AD9	B	502	505	Right-handed 310
Helix 37	AE1	B	737	742	Right-handed alpha
Helix 38	AE2	B	747	756	Right-handed alpha
Helix 39	AE3	B	759	782	Right-handed alpha
Helix 40	AE4	B	816	826	Right-handed alpha
Helix 41	AE5	B	866	884	Right-handed alpha
Helix 42	AE6	B	897	908	Right-handed alpha
Helix 43	AE7	B	913	941	Right-handed alpha
Helix 44	AE8	B	942	944	Right-handed 310
Helix 45	AE9	B	945	965	Right-handed alpha
Helix 46	AF1	B	966	968	Right-handed 310
Helix 47	AF2	B	976	984	Right-handed alpha
Helix 48	AF3	B	985	1033	Right-handed alpha
Helix 49	AF4	B	1140	1145	Right-handed alpha
Helix 50	AF5	C	294	304	Right-handed alpha
Helix 51	AF6	C	337	343	Right-handed alpha
Helix 52	AF7	C	349	353	Right-handed 310
Helix 53	AF8	C	364	371	Right-handed alpha
Helix 54	AF9	C	383	387	Right-handed 310
Helix 55	AG1	C	416	422	Right-handed alpha
Helix 56	AG2	C	502	506	Right-handed 310
Helix 57	AG3	C	737	742	Right-handed alpha
Helix 58	AG4	C	746	755	Right-handed alpha
Helix 59	AG5	C	758	782	Right-handed alpha
Helix 60	AG6	C	816	826	Right-handed alpha
Helix 61	AG7	C	866	884	Right-handed alpha
Helix 62	AG8	C	897	908	Right-handed alpha
Helix 63	AG9	C	916	940	Right-handed alpha
Helix 64	AH1	C	942	944	Right-handed 310
Helix 65	AH2	C	945	965	Right-handed alpha
Helix 66	AH3	C	977	984	Right-handed alpha
Helix 67	AH4	C	985	1033	Right-handed alpha

There are 62 sheets in PDB entry 8HHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	116	120	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	45	51	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	78	83	anti-parallel
Strand 3	F	69	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	48	49	first strand
Strand 2	W	53	54	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	66	67	first strand
Strand 2	W	70	71	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	89	91	first strand
Strand 2	W	96	98	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	98	101	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	94	95	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	52	first strand
Strand 2	G	57	60	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	73	first strand
Strand 2	G	78	83	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	37	first strand
Strand 2	I	45	46	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	53	54	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	91	first strand
Strand 2	I	96	97	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	51	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	93	94	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	51	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	97	98	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	19	23	anti-parallel
Strand 3	L	72	75	anti-parallel
Strand 4	L	64	65	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	38	first strand
Strand 2	L	85	87	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	63	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	264	265	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	101	106	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	169	171	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	224	229	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	611	anti-parallel
Strand 4	A	650	651	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	539	543	parallel
Strand 3	A	549	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	575	577	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	393	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	692	696	parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	1075	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1050	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1082	first strand
Strand 2	A	1133	1134	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1090	first strand
Strand 2	A	1120	1122	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	63	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	241	anti-parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	116	119	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	95	96	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	225	229	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	539	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	380	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	507	514	anti-parallel
Strand 4	B	396	403	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	713	first strand
Strand 2	B	1074	1076	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1050	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1053	1054	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1106	anti-parallel
Strand 3	B	1109	1113	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	63	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	264	265	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	238	anti-parallel
Strand 3	C	106	107	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	241	242	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	126	129	anti-parallel
Strand 3	C	169	171	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	224	229	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	596	599	anti-parallel
Strand 3	C	609	611	anti-parallel
Strand 4	C	650	651	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	592	593	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	539	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	585	588	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	393	402	anti-parallel
Strand 3	C	508	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	C	575	576	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	715	first strand
Strand 2	C	1072	1076	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	727	first strand
Strand 2	C	1060	1069	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	736	first strand
Strand 2	C	858	859	anti-parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1096	first strand
Strand 2	C	1103	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HHY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HHY