Analysis of interatomic Contacts of Structural Units in PDB entry:
8HIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HIJ entry

There are 4 chains in PDB entry 8HIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -82	MET 451
H	GLU 4	LYS 228
N	GLN 1	SER 120
L	ASP 2	ARG 213

There are 30 helices in PDB entry 8HIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-80	-64	Right-handed alpha
Helix 2	AA2	A	-57	-43	Right-handed alpha
Helix 3	AA3	A	-38	-33	Right-handed alpha
Helix 4	AA4	A	-25	-3	Right-handed alpha
Helix 5	AA5	A	3	18	Right-handed alpha
Helix 6	AA6	A	27	39	Right-handed alpha
Helix 7	AA7	A	47	53	Right-handed alpha
Helix 8	AA8	A	60	66	Right-handed alpha
Helix 9	AA9	A	68	79	Right-handed alpha
Helix 10	AB1	A	79	88	Right-handed alpha
Helix 11	AB2	A	92	112	Right-handed alpha
Helix 12	AB3	A	115	132	Right-handed alpha
Helix 13	AB4	A	132	144	Right-handed alpha
Helix 14	AB5	A	148	176	Right-handed alpha
Helix 15	AB6	A	181	202	Right-handed alpha
Helix 16	AB7	A	251	260	Right-handed alpha
Helix 17	AB8	A	264	296	Right-handed alpha
Helix 18	AB9	A	305	323	Right-handed alpha
Helix 19	AC1	A	335	355	Right-handed alpha
Helix 20	AC2	A	358	360	Right-handed 310
Helix 21	AC3	A	361	378	Right-handed alpha
Helix 22	AC4	A	379	389	Right-handed alpha
Helix 23	AC5	A	392	419	Right-handed alpha
Helix 24	AC6	A	427	451	Right-handed alpha
Helix 25	AC7	H	90	94	Right-handed 310
Helix 26	AC8	H	107	112	Right-handed alpha
Helix 27	AC9	H	170	172	Right-handed 310
Helix 28	AD1	H	201	203	Right-handed 310
Helix 29	AD2	N	87	91	Right-handed 310
Helix 30	AD3	L	80	84	Right-handed 310

There are 16 sheets in PDB entry 8HIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	24	28	anti-parallel
Strand 3	H	81	83	anti-parallel
Strand 4	H	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	124	125	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	85	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	54	first strand
Strand 2	H	35	42	anti-parallel
Strand 3	H	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	54	first strand
Strand 2	H	35	42	anti-parallel
Strand 3	H	96	98	anti-parallel
Strand 4	H	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	168	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	69	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	115	119	parallel
Strand 3	N	93	94	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	115	119	parallel
Strand 3	N	93	94	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	104	107	parallel
Strand 3	L	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	47	50	anti-parallel
Strand 3	L	34	37	anti-parallel
Strand 4	L	89	91	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	194	199	anti-parallel
Strand 3	L	208	211	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HIJ