Analysis of interatomic Contacts of Structural Units in PDB entry:
8HIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HIM entry

There are 13 chains in PDB entry 8HIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	C 4	C 29
N	G 6	G 31
P	A 10	C 20
A	GLY 321	ASN 1232
C	GLY 3	ASP 299
F	PRO 58	TRP 137
J	MET 1	ASN 63
K	ARG 6	SER 113
L	PRO 7	ARG 51
H	ILE 5	LYS 145
I	THR 3	GLU 114
E	LEU 22	TRP 230
B	VAL 15	ARG 1048

There are 91 helices in PDB entry 8HIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	343	347	Right-handed alpha
Helix 2	AA2	A	359	369	Right-handed alpha
Helix 3	AA3	A	439	441	Right-handed 310
Helix 4	AA4	A	442	447	Right-handed alpha
Helix 5	AA5	A	462	473	Right-handed alpha
Helix 6	AA6	A	492	505	Right-handed alpha
Helix 7	AA7	A	509	518	Right-handed alpha
Helix 8	AA8	A	541	546	Right-handed alpha
Helix 9	AA9	A	547	549	Right-handed 310
Helix 10	AB1	A	576	591	Right-handed alpha
Helix 11	AB2	A	595	613	Right-handed alpha
Helix 12	AB3	A	620	624	Right-handed 310
Helix 13	AB4	A	627	650	Right-handed alpha
Helix 14	AB5	A	657	675	Right-handed alpha
Helix 15	AB6	A	677	683	Right-handed alpha
Helix 16	AB7	A	689	700	Right-handed alpha
Helix 17	AB8	A	714	729	Right-handed alpha
Helix 18	AB9	A	750	771	Right-handed alpha
Helix 19	AC1	A	773	787	Right-handed alpha
Helix 20	AC2	A	827	847	Right-handed alpha
Helix 21	AC3	A	848	863	Right-handed alpha
Helix 22	AC4	A	872	874	Right-handed 310
Helix 23	AC5	A	884	888	Right-handed 310
Helix 24	AC6	A	891	904	Right-handed alpha
Helix 25	AC7	A	909	911	Right-handed 310
Helix 26	AC8	A	942	949	Right-handed alpha
Helix 27	AC9	A	952	970	Right-handed alpha
Helix 28	AD1	A	975	979	Right-handed 310
Helix 29	AD2	A	1017	1027	Right-handed alpha
Helix 30	AD3	A	1027	1034	Right-handed alpha
Helix 31	AD4	A	1085	1095	Right-handed alpha
Helix 32	AD5	A	1111	1120	Right-handed alpha
Helix 33	AD6	A	1120	1140	Right-handed alpha
Helix 34	AD7	A	1144	1156	Right-handed alpha
Helix 35	AD8	A	1165	1176	Right-handed alpha
Helix 36	AD9	C	30	44	Right-handed alpha
Helix 37	AE1	C	63	73	Right-handed alpha
Helix 38	AE2	C	176	180	Right-handed 310
Helix 39	AE3	C	196	201	Right-handed alpha
Helix 40	AE4	C	204	213	Right-handed alpha
Helix 41	AE5	C	241	250	Right-handed alpha
Helix 42	AE6	C	276	294	Right-handed alpha
Helix 43	AE7	F	66	83	Right-handed alpha
Helix 44	AE8	F	96	107	Right-handed alpha
Helix 45	AE9	J	17	27	Right-handed alpha
Helix 46	AF1	J	30	37	Right-handed alpha
Helix 47	AF2	J	42	51	Right-handed alpha
Helix 48	AF3	J	55	62	Right-handed alpha
Helix 49	AF4	K	39	51	Right-handed alpha
Helix 50	AF5	K	82	113	Right-handed alpha
Helix 51	AF6	E	31	51	Right-handed alpha
Helix 52	AF7	E	63	71	Right-handed alpha
Helix 53	AF8	E	104	119	Right-handed alpha
Helix 54	AF9	E	133	139	Right-handed alpha
Helix 55	AG1	E	172	184	Right-handed alpha
Helix 56	AG2	E	197	204	Right-handed alpha
Helix 57	AG3	B	21	40	Right-handed alpha
Helix 58	AG4	B	43	56	Right-handed alpha
Helix 59	AG5	B	56	65	Right-handed alpha
Helix 60	AG6	B	111	118	Right-handed alpha
Helix 61	AG7	B	239	242	Right-handed 310
Helix 62	AG8	B	275	283	Right-handed alpha
Helix 63	AG9	B	286	295	Right-handed alpha
Helix 64	AH1	B	300	315	Right-handed alpha
Helix 65	AH2	B	325	336	Right-handed alpha
Helix 66	AH3	B	345	354	Right-handed alpha
Helix 67	AH4	B	360	380	Right-handed alpha
Helix 68	AH5	B	390	392	Right-handed 310
Helix 69	AH6	B	398	428	Right-handed alpha
Helix 70	AH7	B	434	439	Right-handed alpha
Helix 71	AH8	B	441	455	Right-handed alpha
Helix 72	AH9	B	478	486	Right-handed alpha
Helix 73	AI1	B	506	510	Right-handed 310
Helix 74	AI2	B	544	552	Right-handed 310
Helix 75	AI3	B	582	595	Right-handed alpha
Helix 76	AI4	B	631	636	Right-handed 310
Helix 77	AI5	B	645	652	Right-handed alpha
Helix 78	AI6	B	660	664	Right-handed alpha
Helix 79	AI7	B	672	678	Right-handed alpha
Helix 80	AI8	B	688	693	Right-handed 310
Helix 81	AI9	B	702	706	Right-handed 310
Helix 82	AJ1	B	707	717	Right-handed alpha
Helix 83	AJ2	B	729	733	Right-handed 310
Helix 84	AJ3	B	751	758	Right-handed alpha
Helix 85	AJ4	B	788	793	Right-handed alpha
Helix 86	AJ5	B	925	929	Right-handed 310
Helix 87	AJ6	B	943	945	Right-handed 310
Helix 88	AJ7	B	946	951	Right-handed alpha
Helix 89	AJ8	B	953	967	Right-handed alpha
Helix 90	AJ9	B	993	1004	Right-handed alpha
Helix 91	AK1	B	1040	1044	Right-handed 310

There are 34 sheets in PDB entry 8HIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1048	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	454	459	anti-parallel
Strand 4	A	409	413	anti-parallel
Strand 5	A	424	431	anti-parallel
Strand 6	A	338	342	parallel
Strand 7	A	436	438	anti-parallel
Strand 8	A	322	330	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	399	403	anti-parallel
Strand 3	A	372	376	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	539	540	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	H	92	99	anti-parallel
Strand 3	H	138	140	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	H	92	99	anti-parallel
Strand 3	H	112	116	anti-parallel
Strand 4	H	119	123	anti-parallel
Strand 5	H	40	46	anti-parallel
Strand 6	H	27	34	anti-parallel
Strand 7	H	9	17	anti-parallel
Strand 8	H	59	61	anti-parallel
Strand 9	H	143	144	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	556	first strand
Strand 2	A	560	563	anti-parallel
Strand 3	A	567	570	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	740	741	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel
Strand 3	A	805	807	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1043	1049	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	876	879	anti-parallel
Strand 4	A	1108	1109	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1036	1038	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	986	first strand
Strand 2	A	1004	1008	anti-parallel
Strand 3	A	935	940	anti-parallel
Strand 4	A	914	919	anti-parallel
Strand 5	I	42	47	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1230	first strand
Strand 2	F	113	117	anti-parallel
Strand 3	F	123	127	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	18	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	256	271	anti-parallel
Strand 4	C	182	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	18	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	256	271	anti-parallel
Strand 4	C	189	195	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	161	171	anti-parallel
Strand 4	C	47	58	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	228	231	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	886	anti-parallel
Strand 5	B	891	902	anti-parallel
Strand 6	B	798	809	anti-parallel
Strand 7	B	737	741	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	886	anti-parallel
Strand 5	B	849	850	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	16	first strand
Strand 2	I	26	29	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	98	103	anti-parallel
Strand 3	I	111	113	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	124	128	parallel
Strand 3	E	148	151	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	210	215	anti-parallel
Strand 3	E	223	229	anti-parallel
Strand 4	E	192	193	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	87	97	anti-parallel
Strand 3	B	123	133	anti-parallel
Strand 4	B	163	171	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	108	109	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	471	473	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	488	490	parallel
Strand 4	B	527	529	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	263	268	anti-parallel
Strand 5	B	272	274	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	623	629	anti-parallel
Strand 3	B	655	659	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	623	629	anti-parallel
Strand 3	B	684	685	anti-parallel
Strand 4	B	668	669	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	580	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	613	617	parallel
Strand 4	B	604	608	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1011	1012	first strand
Strand 2	B	1027	1036	anti-parallel
Strand 3	B	909	911	anti-parallel
Strand 4	B	917	924	anti-parallel
Strand 5	B	783	787	parallel
Strand 6	B	940	942	anti-parallel
Strand 7	B	766	772	parallel
Strand 8	B	1027	1036	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	855	857	first strand
Strand 2	B	869	870	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HIM