Analysis of interatomic Contacts of Structural Units in PDB entry:
8HIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HIO entry

There are 3 chains in PDB entry 8HIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C -31 C 15
A
 MET 1ALA 592
D
 PRO 18TRP 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8HIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 52Right-handed alpha
Helix 2
AA2
A
53 85Right-handed alpha
Helix 3
AA3
A
92 119Right-handed alpha
Helix 4
AA4
A
122 145Right-handed alpha
Helix 5
AA5
A
151 175Right-handed alpha
Helix 6
AA6
A
206 212Right-handed alpha
Helix 7
AA7
A
228 233Right-handed alpha
Helix 8
AA8
A
236 244Right-handed alpha
Helix 9
AA9
A
341 345Right-handed 310
Helix 10
AB1
A
363 397Right-handed alpha
Helix 11
AB2
A
408 414Right-handed alpha
Helix 12
AB3
A
417 428Right-handed alpha
Helix 13
AB4
A
433 479Right-handed alpha
Helix 14
AB5
A
510 518Right-handed alpha
Helix 15
AB6
A
518 534Right-handed alpha
Helix 16
AB7
A
560 564Right-handed 310
Helix 17
AB8
A
577 591Right-handed alpha
Helix 18
AB9
D
19 52Right-handed alpha
Helix 19
AC1
D
53 64Right-handed alpha
Helix 20
AC2
D
96 118Right-handed alpha
Helix 21
AC3
D
119 121Right-handed 310
Helix 22
AC4
D
122 145Right-handed alpha
Helix 23
AC5
D
151 176Right-handed alpha
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There are 4 sheets in PDB entry 8HIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
277 288anti-parallel
Strand 3
A
291 301anti-parallel
Strand 4
A
4 11anti-parallel
Strand 5
A
259 267anti-parallel
Strand 6
A
245 254anti-parallel
Strand 7
A
221 222anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
356 362anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
313 318anti-parallel
Strand 4
A
481 485parallel
Strand 5
A
537 540parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
575 576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il