Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HJ1 entry

There are 5 chains in PDB entry 8HJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLU 3	ASN 340
G	THR 6	ARG 62
N	GLN 1	VAL 126
R	ASN 26	THR 324

There are 27 helices in PDB entry 8HJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	39	Right-handed alpha
Helix 2	AA2	A	52	63	Right-handed alpha
Helix 3	AA3	A	266	278	Right-handed alpha
Helix 4	AA4	A	293	304	Right-handed alpha
Helix 5	AA5	A	307	312	Right-handed alpha
Helix 6	AA6	A	331	350	Right-handed alpha
Helix 7	AA7	A	370	391	Right-handed alpha
Helix 8	AA8	B	4	26	Right-handed alpha
Helix 9	AA9	B	29	34	Right-handed alpha
Helix 10	AB1	G	7	22	Right-handed alpha
Helix 11	AB2	G	29	44	Right-handed alpha
Helix 12	AB3	N	28	32	Right-handed 310
Helix 13	AB4	R	28	56	Right-handed alpha
Helix 14	AB5	R	56	61	Right-handed alpha
Helix 15	AB6	R	62	82	Right-handed alpha
Helix 16	AB7	R	82	91	Right-handed alpha
Helix 17	AB8	R	100	133	Right-handed alpha
Helix 18	AB9	R	136	141	Right-handed alpha
Helix 19	AC1	R	142	161	Right-handed alpha
Helix 20	AC2	R	161	166	Right-handed alpha
Helix 21	AC3	R	178	185	Right-handed alpha
Helix 22	AC4	R	188	199	Right-handed alpha
Helix 23	AC5	R	199	232	Right-handed alpha
Helix 24	AC6	R	252	276	Right-handed alpha
Helix 25	AC7	R	283	295	Right-handed alpha
Helix 26	AC8	R	295	307	Right-handed alpha
Helix 27	AC9	R	308	324	Right-handed alpha

There are 11 sheets in PDB entry 8HJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	245	249	parallel
Strand 5	A	288	292	parallel
Strand 6	A	360	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	319	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	37	39	anti-parallel
Strand 5	N	46	47	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	49	51	first strand
Strand 2	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ1