Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HJ4 entry

There are 3 chains in PDB entry 8HJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 1082
B
 U 16 U 132
C
 MET 1ASN 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8HJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 89Right-handed alpha
Helix 2
AA2
A
109 117Right-handed alpha
Helix 3
AA3
A
118 120Right-handed 310
Helix 4
AA4
A
123 137Right-handed alpha
Helix 5
AA5
A
154 172Right-handed alpha
Helix 6
AA6
A
176 189Right-handed alpha
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
204 222Right-handed alpha
Helix 9
AA9
A
230 241Right-handed alpha
Helix 10
AB1
A
247 255Right-handed alpha
Helix 11
AB2
A
271 285Right-handed alpha
Helix 12
AB3
A
298 307Right-handed alpha
Helix 13
AB4
A
307 312Right-handed alpha
Helix 14
AB5
A
317 324Right-handed alpha
Helix 15
AB6
A
350 363Right-handed alpha
Helix 16
AB7
A
375 389Right-handed alpha
Helix 17
AB8
A
391 399Right-handed alpha
Helix 18
AB9
A
405 415Right-handed alpha
Helix 19
AC1
A
424 436Right-handed alpha
Helix 20
AC2
A
474 496Right-handed alpha
Helix 21
AC3
A
512 541Right-handed alpha
Helix 22
AC4
A
549 562Right-handed alpha
Helix 23
AC5
A
575 579Right-handed 310
Helix 24
AC6
A
591 596Right-handed alpha
Helix 25
AC7
A
629 641Right-handed alpha
Helix 26
AC8
A
645 653Right-handed alpha
Helix 27
AC9
A
658 666Right-handed alpha
Helix 28
AD1
A
671 684Right-handed alpha
Helix 29
AD2
A
699 710Right-handed alpha
Helix 30
AD3
A
721 732Right-handed alpha
Helix 31
AD4
A
734 750Right-handed alpha
Helix 32
AD5
A
778 789Right-handed alpha
Helix 33
AD6
A
802 814Right-handed alpha
Helix 34
AD7
A
817 821Right-handed 310
Helix 35
AD8
A
865 868Right-handed 310
Helix 36
AD9
A
869 874Right-handed alpha
Helix 37
AE1
A
875 879Right-handed 310
Helix 38
AE2
A
881 895Right-handed alpha
Helix 39
AE3
A
898 903Right-handed alpha
Helix 40
AE4
A
966 971Right-handed alpha
Helix 41
AE5
A
984 988Right-handed 310
Helix 42
AE6
C
21 38Right-handed alpha
Helix 43
AE7
C
42 52Right-handed alpha
Helix 44
AE8
C
57 65Right-handed alpha
Helix 45
AE9
C
95 102Right-handed alpha
Helix 46
AF1
C
110 117Right-handed alpha
Helix 47
AF2
C
117 129Right-handed alpha
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There are 11 sheets in PDB entry 8HJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 502first strand
Strand 2
A
11 17parallel
Strand 3
A
21 29anti-parallel
Strand 4
A
35 45anti-parallel
Strand 5
A
831 832parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
293 296anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
346 349anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
604 606anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 849first strand
Strand 2
A
940 941anti-parallel
Strand 3
A
934 935anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
860 863first strand
Strand 2
A
922 925anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 908first strand
Strand 2
A
919 920anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
960 965first strand
Strand 2
A
947 953anti-parallel
Strand 3
A
997 1001anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1050first strand
Strand 2
A
1030 1033anti-parallel
Strand 3
A
1015 1023anti-parallel
Strand 4
A
1005 1010anti-parallel
Strand 5
A
1058 1062anti-parallel
Strand 6
A
1071 1072anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
79 81anti-parallel
Strand 3
C
87 90anti-parallel
Strand 4
C
93 94anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
10 11anti-parallel
Strand 3
C
74 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il