Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HJ5 entry

There are 6 chains in PDB entry 8HJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 4	VAL 362
B	LEU 25	ASN 361
D	GLN 11	PHE 61
C	VAL 2	LEU 248
F	GLN 26	PHE 278
E	GLN 1	SER 127

There are 23 helices in PDB entry 8HJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	34	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	233	246	Right-handed alpha
Helix 4	AA4	A	261	271	Right-handed alpha
Helix 5	AA5	A	275	279	Right-handed 310
Helix 6	AA6	A	280	286	Right-handed 310
Helix 7	AA7	A	299	320	Right-handed alpha
Helix 8	AA8	A	338	359	Right-handed alpha
Helix 9	AA9	B	27	46	Right-handed alpha
Helix 10	AB1	B	50	55	Right-handed alpha
Helix 11	AB2	B	149	153	Right-handed 310
Helix 12	AB3	D	13	24	Right-handed alpha
Helix 13	AB4	D	29	44	Right-handed alpha
Helix 14	AB5	C	28	32	Right-handed 310
Helix 15	AB6	F	28	52	Right-handed alpha
Helix 16	AB7	F	59	88	Right-handed alpha
Helix 17	AB8	F	92	126	Right-handed alpha
Helix 18	AB9	F	126	132	Right-handed alpha
Helix 19	AC1	F	137	160	Right-handed alpha
Helix 20	AC2	F	171	205	Right-handed alpha
Helix 21	AC3	F	211	240	Right-handed alpha
Helix 22	AC4	F	251	277	Right-handed alpha
Helix 23	AC5	E	28	32	Right-handed 310

There are 15 sheets in PDB entry 8HJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	192	first strand
Strand 2	A	195	202	anti-parallel
Strand 3	A	35	39	parallel
Strand 4	A	221	227	parallel
Strand 5	A	254	260	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	357	360	anti-parallel
Strand 3	B	348	352	anti-parallel
Strand 4	B	336	341	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	109	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	141	146	anti-parallel
Strand 4	B	155	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	174	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	186	189	anti-parallel
Strand 4	B	199	202	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	213	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	229	232	anti-parallel
Strand 4	B	239	243	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	255	first strand
Strand 2	B	261	266	anti-parallel
Strand 3	B	271	275	anti-parallel
Strand 4	B	281	285	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	299	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	316	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	115	119	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	244	247	parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	175	180	anti-parallel
Strand 5	C	187	191	anti-parallel
Strand 6	C	195	196	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	161	first strand
Strand 2	C	212	217	anti-parallel
Strand 3	C	204	209	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	23	25	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	122	126	parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	20	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	69	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ5