Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HJ8 entry

There is 1 chain in PDB entry 8HJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3THR 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8HJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
11 21Right-handed alpha
Helix 3
AA3
A
24 32Right-handed alpha
Helix 4
AA4
A
38 40Right-handed 310
Helix 5
AA5
A
41 48Right-handed alpha
Helix 6
AA6
A
66 83Right-handed alpha
Helix 7
AA7
A
111 118Right-handed alpha
Helix 8
AA8
A
120 137Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
166 173Right-handed alpha
Helix 11
AB2
A
175 182Right-handed alpha
Helix 12
AB3
A
210 218Right-handed 310
Helix 13
AB4
A
226 234Right-handed alpha
Helix 14
AB5
A
235 244Right-handed alpha
Helix 15
AB6
A
264 269Right-handed alpha
Helix 16
AB7
A
289 293Right-handed 310
Helix 17
AB8
A
299 311Right-handed alpha
Helix 18
AB9
A
320 334Right-handed alpha
Helix 19
AC1
A
338 356Right-handed alpha
Helix 20
AC2
A
365 372Right-handed 310
Helix 21
AC3
A
374 389Right-handed alpha
Helix 22
AC4
A
422 428Right-handed alpha
Helix 23
AC5
A
446 455Right-handed alpha
Helix 24
AC6
A
468 475Right-handed alpha
Helix 25
AC7
A
490 495Right-handed 310
Helix 26
AC8
A
505 516Right-handed alpha
Helix 27
AC9
A
530 537Right-handed alpha
Helix 28
AD1
A
550 558Right-handed alpha
Helix 29
AD2
A
574 578Right-handed 310
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There are 4 sheets in PDB entry 8HJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
91 94parallel
Strand 3
A
52 55parallel
Strand 4
A
33 36parallel
Strand 5
A
315 316parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
248 251parallel
Strand 3
A
281 283parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
255 256parallel
Strand 3
A
259 260anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 394first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
518 523parallel
Strand 4
A
480 485parallel
Strand 5
A
412 416parallel
Strand 6
A
460 464parallel
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