Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HJN entry

There are 2 chains in PDB entry 8HJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9HIS 456
B
 THR 9HIS 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8HJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
91 101Right-handed alpha
Helix 8
AA8
A
102 114Right-handed alpha
Helix 9
AA9
A
125 134Right-handed alpha
Helix 10
AB1
A
145 158Right-handed alpha
Helix 11
AB2
A
171 176Right-handed alpha
Helix 12
AB3
A
188 192Right-handed alpha
Helix 13
AB4
A
201 204Right-handed 310
Helix 14
AB5
A
212 228Right-handed alpha
Helix 15
AB6
A
249 258Right-handed alpha
Helix 16
AB7
A
277 292Right-handed alpha
Helix 17
AB8
A
334 340Right-handed alpha
Helix 18
AB9
A
352 363Right-handed alpha
Helix 19
AC1
A
374 386Right-handed alpha
Helix 20
AC2
A
400 412Right-handed alpha
Helix 21
AC3
A
417 433Right-handed alpha
Helix 22
AC4
A
435 438Right-handed 310
Helix 23
AC5
A
439 456Right-handed alpha
Helix 24
AC6
B
19 36Right-handed alpha
Helix 25
AC7
B
45 53Right-handed alpha
Helix 26
AC8
B
54 56Right-handed 310
Helix 27
AC9
B
57 61Right-handed 310
Helix 28
AD1
B
78 82Right-handed 310
Helix 29
AD2
B
88 90Right-handed 310
Helix 30
AD3
B
91 101Right-handed alpha
Helix 31
AD4
B
102 114Right-handed alpha
Helix 32
AD5
B
125 134Right-handed alpha
Helix 33
AD6
B
145 158Right-handed alpha
Helix 34
AD7
B
171 176Right-handed alpha
Helix 35
AD8
B
188 193Right-handed alpha
Helix 36
AD9
B
194 197Right-handed 310
Helix 37
AE1
B
202 204Right-handed 310
Helix 38
AE2
B
212 228Right-handed alpha
Helix 39
AE3
B
247 259Right-handed alpha
Helix 40
AE4
B
277 292Right-handed alpha
Helix 41
AE5
B
317 322Right-handed alpha
Helix 42
AE6
B
334 341Right-handed alpha
Helix 43
AE7
B
352 363Right-handed alpha
Helix 44
AE8
B
374 385Right-handed alpha
Helix 45
AE9
B
400 412Right-handed alpha
Helix 46
AF1
B
417 433Right-handed alpha
Helix 47
AF2
B
435 438Right-handed 310
Helix 48
AF3
B
439 454Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8HJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
38 44parallel
Strand 3
A
10 15parallel
Strand 4
A
117 120parallel
Strand 5
A
138 142parallel
Strand 6
A
206 209parallel
Strand 7
A
230 233parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
294 299parallel
Strand 3
A
265 269parallel
Strand 4
A
344 349parallel
Strand 5
A
366 368parallel
Strand 6
A
388 390parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
39 44parallel
Strand 3
B
11 15parallel
Strand 4
B
117 120parallel
Strand 5
B
138 142parallel
Strand 6
B
206 209parallel
Strand 7
B
230 233parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 330first strand
Strand 2
B
294 299parallel
Strand 3
B
265 269parallel
Strand 4
B
344 349parallel
Strand 5
B
366 368parallel
Strand 6
B
388 390parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il