Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HJT entry

There are 4 chains in PDB entry 8HJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 324	GLU 520
B	LEU 325	ALA 519
C	LYS 334	ALA 513
D	LEU 336	ALA 513

There are 7 helices in PDB entry 8HJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	334	338	Right-handed 310
Helix 2	AA2	A	414	417	Right-handed 310
Helix 3	AA3	B	414	417	Right-handed 310
Helix 4	AA4	B	455	457	Right-handed 310
Helix 5	AA5	C	425	428	Right-handed 310
Helix 6	AA6	D	345	349	Right-handed 310
Helix 7	AA7	D	425	428	Right-handed 310

There are 10 sheets in PDB entry 8HJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	350	353	anti-parallel
Strand 3	A	495	497	anti-parallel
Strand 4	A	383	389	anti-parallel
Strand 5	A	326	328	parallel
Strand 6	B	326	328	anti-parallel
Strand 7	B	383	389	parallel
Strand 8	B	495	497	anti-parallel
Strand 9	B	350	353	anti-parallel
Strand 10	B	342	344	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	B	468	472	anti-parallel
Strand 3	B	458	463	anti-parallel
Strand 4	B	447	453	anti-parallel
Strand 5	B	383	389	anti-parallel
Strand 6	B	326	328	parallel
Strand 7	A	326	328	anti-parallel
Strand 8	A	383	389	parallel
Strand 9	A	447	453	anti-parallel
Strand 10	A	458	463	anti-parallel
Strand 11	A	468	472	anti-parallel
Strand 12	B	514	515	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	482	488	anti-parallel
Strand 3	A	396	402	anti-parallel
Strand 4	A	419	425	anti-parallel
Strand 5	A	428	431	anti-parallel
Strand 6	A	438	439	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	482	488	anti-parallel
Strand 3	B	396	402	anti-parallel
Strand 4	B	419	424	anti-parallel
Strand 5	B	429	431	anti-parallel
Strand 6	B	438	439	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	394	400	parallel
Strand 3	C	508	510	anti-parallel
Strand 4	C	361	364	anti-parallel
Strand 5	C	353	355	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	394	400	parallel
Strand 3	C	459	465	anti-parallel
Strand 4	C	470	475	anti-parallel
Strand 5	C	480	484	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	494	499	anti-parallel
Strand 3	C	407	413	anti-parallel
Strand 4	C	430	436	anti-parallel
Strand 5	C	440	443	anti-parallel
Strand 6	C	449	451	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	394	400	parallel
Strand 3	D	508	510	anti-parallel
Strand 4	D	361	364	anti-parallel
Strand 5	D	353	355	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	394	400	parallel
Strand 3	D	460	465	anti-parallel
Strand 4	D	470	475	anti-parallel
Strand 5	D	481	485	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	494	499	anti-parallel
Strand 3	D	407	413	anti-parallel
Strand 4	D	430	436	anti-parallel
Strand 5	D	440	444	anti-parallel
Strand 6	D	449	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJT