Analysis of interatomic Contacts of Structural Units in PDB entry:
8HJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HJV entry

There are 35 chains in PDB entry 8HJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 ASN 7ARG 55
1
 GLU 7ALA 41
2
 ASN 7ARG 55
3
 ARG 4ALA 41
4
 ASN 7ARG 55
5
 ARG 4ALA 41
6
 ASN 7ARG 55
7
 ARG 4ALA 41
8
 ASN 7ARG 55
9
 ARG 4ALA 41
A
 ARG 4ALA 41
B
 ASN 7ARG 55
D
 ARG 4ALA 41
E
 ASN 7ARG 55
F
 ARG 4ALA 41
G
 ASN 7ARG 55
H
 ARG 4ALA 41
I
 ASN 7ARG 55
J
 ARG 4ALA 41
K
 ASN 7ARG 55
L
 ARG 6GLY 309
M
 PRO 335PHE 640
N
 ARG 4ALA 41
O
 ASN 7ARG 55
P
 ARG 4ALA 41
Q
 ASN 7ARG 55
R
 ARG 4ALA 41
S
 ASN 7ARG 55
T
 ARG 4ALA 41
U
 ASN 7ARG 55
V
 PRO 5ALA 35
W
 ASN 7ARG 55
Y
 MET 1PRO 32
C
 VAL 30PRO 320
Z
 SER 12ASN 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8HJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
0
20 51Right-handed alpha
Helix 2
AA2
1
8 34Right-handed alpha
Helix 3
AA3
2
19 51Right-handed alpha
Helix 4
AA4
3
7 34Right-handed alpha
Helix 5
AA5
4
11 15Right-handed 310
Helix 6
AA6
4
20 51Right-handed alpha
Helix 7
AA7
5
7 34Right-handed alpha
Helix 8
AA8
6
20 51Right-handed alpha
Helix 9
AA9
7
7 34Right-handed alpha
Helix 10
AB1
8
11 15Right-handed 310
Helix 11
AB2
8
20 51Right-handed alpha
Helix 12
AB3
9
7 34Right-handed alpha
Helix 13
AB4
A
7 34Right-handed alpha
Helix 14
AB5
B
20 51Right-handed alpha
Helix 15
AB6
D
7 34Right-handed alpha
Helix 16
AB7
E
20 51Right-handed alpha
Helix 17
AB8
F
7 34Right-handed alpha
Helix 18
AB9
G
20 51Right-handed alpha
Helix 19
AC1
H
7 34Right-handed alpha
Helix 20
AC2
I
11 15Right-handed 310
Helix 21
AC3
I
20 51Right-handed alpha
Helix 22
AC4
J
7 34Right-handed alpha
Helix 23
AC5
K
20 51Right-handed alpha
Helix 24
AC6
L
35 43Right-handed alpha
Helix 25
AC7
L
49 56Right-handed alpha
Helix 26
AC8
L
70 93Right-handed alpha
Helix 27
AC9
L
109 113Right-handed 310
Helix 28
AD1
L
122 151Right-handed alpha
Helix 29
AD2
L
154 172Right-handed alpha
Helix 30
AD3
L
172 179Right-handed alpha
Helix 31
AD4
L
191 203Right-handed alpha
Helix 32
AD5
L
205 208Right-handed 310
Helix 33
AD6
L
209 236Right-handed alpha
Helix 34
AD7
L
244 253Right-handed alpha
Helix 35
AD8
L
259 288Right-handed alpha
Helix 36
AD9
L
294 306Right-handed 310
Helix 37
AE1
M
338 342Right-handed 310
Helix 38
AE2
M
359 366Right-handed alpha
Helix 39
AE3
M
376 402Right-handed alpha
Helix 40
AE4
M
404 411Right-handed alpha
Helix 41
AE5
M
412 415Right-handed 310
Helix 42
AE6
M
435 464Right-handed alpha
Helix 43
AE7
M
467 485Right-handed alpha
Helix 44
AE8
M
493 497Right-handed 310
Helix 45
AE9
M
501 517Right-handed alpha
Helix 46
AF1
M
518 521Right-handed 310
Helix 47
AF2
M
522 549Right-handed alpha
Helix 48
AF3
M
550 553Right-handed 310
Helix 49
AF4
M
556 563Right-handed alpha
Helix 50
AF5
M
565 580Right-handed alpha
Helix 51
AF6
M
586 609Right-handed alpha
Helix 52
AF7
M
616 624Right-handed alpha
Helix 53
AF8
M
634 638Right-handed 310
Helix 54
AF9
N
7 34Right-handed alpha
Helix 55
AG1
O
20 51Right-handed alpha
Helix 56
AG2
P
7 34Right-handed alpha
Helix 57
AG3
Q
20 50Right-handed alpha
Helix 58
AG4
R
7 34Right-handed alpha
Helix 59
AG5
S
20 50Right-handed alpha
Helix 60
AG6
T
7 34Right-handed alpha
Helix 61
AG7
U
19 51Right-handed alpha
Helix 62
AG8
V
8 32Right-handed alpha
Helix 63
AG9
W
19 51Right-handed alpha
Helix 64
AH1
Y
2 30Right-handed alpha
Helix 65
AH2
C
31 47Right-handed alpha
Helix 66
AH3
C
71 85Right-handed alpha
Helix 67
AH4
C
98 109Right-handed alpha
Helix 68
AH5
C
109 115Right-handed alpha
Helix 69
AH6
C
138 156Right-handed alpha
Helix 70
AH7
C
218 236Right-handed alpha
Helix 71
AH8
C
239 243Right-handed 310
Helix 72
AH9
C
255 274Right-handed alpha
Helix 73
AI1
C
293 298Right-handed alpha
Helix 74
AI2
Z
18 47Right-handed alpha
Helix 75
AI3
Z
53 58Right-handed alpha
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There are 2 sheets in PDB entry 8HJV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
7 9first strand
Strand 2
L
15 17anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 34first strand
Strand 2
Z
49 51anti-parallel
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