Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HK0 entry

There are 4 chains in PDB entry 8HK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1ALA 358
D
 MET 1ARG 356
A
 MET 1PHE 376
B
 MET 1ASP 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8HK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
6 21Right-handed alpha
Helix 2
AA2
C
42 49Right-handed alpha
Helix 3
AA3
C
50 54Right-handed 310
Helix 4
AA4
C
57 61Right-handed 310
Helix 5
AA5
C
65 81Right-handed alpha
Helix 6
AA6
C
86 94Right-handed alpha
Helix 7
AA7
C
181 183Right-handed 310
Helix 8
AA8
C
195 226Right-handed alpha
Helix 9
AA9
C
236 270Right-handed alpha
Helix 10
AB1
C
284 286Right-handed 310
Helix 11
AB2
C
287 312Right-handed alpha
Helix 12
AB3
C
313 317Right-handed 310
Helix 13
AB4
C
321 333Right-handed alpha
Helix 14
AB5
C
338 358Right-handed alpha
Helix 15
AB6
D
6 22Right-handed alpha
Helix 16
AB7
D
42 49Right-handed alpha
Helix 17
AB8
D
50 54Right-handed 310
Helix 18
AB9
D
65 81Right-handed alpha
Helix 19
AC1
D
86 94Right-handed alpha
Helix 20
AC2
D
181 183Right-handed 310
Helix 21
AC3
D
195 226Right-handed alpha
Helix 22
AC4
D
236 269Right-handed alpha
Helix 23
AC5
D
287 312Right-handed alpha
Helix 24
AC6
D
313 317Right-handed 310
Helix 25
AC7
D
321 333Right-handed alpha
Helix 26
AC8
D
338 354Right-handed alpha
Helix 27
AC9
A
6 20Right-handed alpha
Helix 28
AD1
A
22 33Right-handed alpha
Helix 29
AD2
A
42 52Right-handed alpha
Helix 30
AD3
A
60 64Right-handed 310
Helix 31
AD4
A
69 83Right-handed alpha
Helix 32
AD5
A
87 94Right-handed alpha
Helix 33
AD6
A
96 105Right-handed alpha
Helix 34
AD7
A
106 119Right-handed alpha
Helix 35
AD8
A
136 140Right-handed 310
Helix 36
AD9
A
163 166Right-handed 310
Helix 37
AE1
A
221 223Right-handed 310
Helix 38
AE2
A
231 244Right-handed alpha
Helix 39
AE3
A
246 266Right-handed alpha
Helix 40
AE4
A
273 275Right-handed 310
Helix 41
AE5
A
276 304Right-handed alpha
Helix 42
AE6
A
307 331Right-handed alpha
Helix 43
AE7
A
334 341Right-handed alpha
Helix 44
AE8
A
342 359Right-handed alpha
Helix 45
AE9
A
364 373Right-handed alpha
Helix 46
AF1
A
374 376Right-handed 310
Helix 47
AF2
B
6 21Right-handed alpha
Helix 48
AF3
B
22 33Right-handed alpha
Helix 49
AF4
B
42 52Right-handed alpha
Helix 50
AF5
B
60 64Right-handed 310
Helix 51
AF6
B
69 83Right-handed alpha
Helix 52
AF7
B
87 94Right-handed alpha
Helix 53
AF8
B
96 105Right-handed alpha
Helix 54
AF9
B
106 119Right-handed alpha
Helix 55
AG1
B
136 140Right-handed 310
Helix 56
AG2
B
163 166Right-handed 310
Helix 57
AG3
B
221 223Right-handed 310
Helix 58
AG4
B
231 244Right-handed alpha
Helix 59
AG5
B
246 266Right-handed alpha
Helix 60
AG6
B
276 303Right-handed alpha
Helix 61
AG7
B
307 331Right-handed alpha
Helix 62
AG8
B
334 340Right-handed alpha
Helix 63
AG9
B
342 355Right-handed alpha
Helix 64
AH1
B
356 358Right-handed 310
Helix 65
AH2
B
364 374Right-handed alpha
Helix 66
AH3
B
375 378Right-handed 310
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There are 10 sheets in PDB entry 8HK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
140 146parallel
Strand 3
C
115 119parallel
Strand 4
C
124 131anti-parallel
Strand 5
C
172 180anti-parallel
Strand 6
C
162 165anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
140 146parallel
Strand 3
C
149 155anti-parallel
Strand 4
C
185 188anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 228first strand
Strand 2
C
231 232anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
140 146parallel
Strand 3
D
115 120parallel
Strand 4
D
123 131anti-parallel
Strand 5
D
172 180anti-parallel
Strand 6
D
162 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
140 146parallel
Strand 3
D
149 155anti-parallel
Strand 4
D
185 188anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
227 228first strand
Strand 2
D
231 232anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
168 174parallel
Strand 3
A
185 191anti-parallel
Strand 4
A
225 226anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
150 161anti-parallel
Strand 3
A
210 220anti-parallel
Strand 4
A
197 202anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
168 174parallel
Strand 3
B
185 191anti-parallel
Strand 4
B
225 226anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
150 161anti-parallel
Strand 3
B
210 220anti-parallel
Strand 4
B
197 202anti-parallel
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